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vanillaice
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Where is 'constructOligoSetFrom' or 'constructOligoSetListFrom' function?
crlmm
vanillaice
10.7 years ago
Shi, Tao
▴ 720
0
votes
4
replies
1.9k
views
Trouble following the first 5 lines of vanillaICE tutorial?
SNP6
crlmm
vanillaice
vanillaice crlmm
cnv
updated 10.8 years ago by
rscharpf
• 0 • written 10.8 years ago by
cafelumiere12
▴ 20
0
votes
0
replies
1.4k
views
Copy number analysis
SNP
affy
VanillaICE
SNP
affy
VanillaICE
14.0 years ago
Rob Scharpf
▴ 250
0
votes
2
replies
1.6k
views
VanillaICE
Proteomics
VanillaICE
Proteomics
VanillaICE
updated 14.3 years ago by
Valerie Obenchain
★ 6.8k • written 14.3 years ago by
Francesco Mancuso
▴ 110
0
votes
0
replies
1.4k
views
Annotation for Mouse Affy SNP arrays (MOUSEDIVm520650)?
Annotation
Cancer
VanillaICE
crlmm
Annotation
Cancer
VanillaICE
crlmm
14.4 years ago
Daniel Rico
▴ 110
0
votes
0
replies
1.7k
views
Question about using oligo and SNPchip for copy number analysis
SNP
Cancer
graph
oligo
SNPchip
oligoClasses
VanillaICE
crlmm
SNP
Cancer
graph
oligo
16.8 years ago
Min-Han Tan
▴ 40
0
votes
4
replies
2.0k
views
Creating a new instance of oligoSnpSet
Annotation
Cancer
Breast
VanillaICE
copynumber
Annotation
Cancer
Breast
VanillaICE
17.3 years ago
Steven McKinney
▴ 310
7 results • Page
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Comment: Inclusion of non-coding portions of transcripts (UTR-regions and introns) within
by
Pat
• 0
Ill be honest, I didnt trust any of these services for a long time. Im a political science major and the pressure around writing is intense…
Comment: Question on processing compound protein groups in limpa
by
brianpeterson1210
• 0
Thank you[,][1] Appreciated! [1]: http://paint3d.org
Comment: Subsetting DDS object for individual conditions over time
by
A
▴ 60
Hi @atpoint Thank you for the quick reply! and this makes sense! I will confirm with a corr to see how the SFs differ but also how DE dif…
Answer: Subsetting DDS object for individual conditions over time
by
ATpoint
★ 5.0k
It would surprise my quite a bit if the size factors would differ notably between subset or not. I would always try to keep the size factor…
Comment: GSEA error
by
Adithi
• 0
Thank you so much. That makes perfect sense to me. I will work on this.
Votes
Comment: Question about using LRT test for time course experiments with DESeq2
A: DESeq2 LRT test for multi-factor designs
Answer: RNA Seq using Lrt
Answer: DESeq2 LRT Reduced Formula
Answer: DESeq2: LRT or WALD guidance
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