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vsn2
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Problem with VSN: Error in vsnML(sv) : L-BFGS-B needs finite values of 'fn'
justvsn
vsn
Normalization
vsn2
Proteomics
15 months ago
Arend
▴ 10
2
votes
3
replies
1.1k
views
one stratum from vsn2
vsn
vsn2
onestratum
updated 3.3 years ago by
Wolfgang Huber
★ 13k • written 3.3 years ago by
pros_vs_chur
• 0
1
vote
2
replies
1.2k
views
Bug in vsn2 in package vsn?
vsn
vsn2
updated 7.2 years ago by
Wolfgang Huber
★ 13k • written 7.2 years ago by
Peter Langfelder
★ 3.0k
1
vote
5
replies
2.9k
views
significance of changes in TMT proteomics data using vsn2 and limma
limma
vsn2
updated 8.6 years ago by
Ryan C. Thompson
★ 7.9k • written 8.6 years ago by
lukas.burger
• 0
4
votes
6
replies
1.8k
views
rounding issues using the VSN package
vsn2
limma
updated 8.8 years ago by
Wolfgang Huber
★ 13k • written 8.8 years ago by
aurelien
▴ 10
5 results • Page
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Comment: Why p value inconsistent when using different number of pathway score?
by
Chris
• 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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