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maxcooks outliers zero counts DESeq2

updated 3 months ago by Michael Love 37k • written 3 months ago by andreia • 0

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deseq2 error R estimatesizefactors zero

updated 11 weeks ago by LW • 0 • written 4.7 years ago by abhishek.yedugondla • 0

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deseq2 input files zero

updated 4.9 years ago by Michael Love 37k • written 4.9 years ago by yanmin • 0

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Comment: why org.Hs.egGO2ALLEGS contain genes number difference from GO database? by pengmin.wang.1 • 0

yes, I also find genes in org.Bt.egGO2ALLEGS (bovine) are always less than online GO database in the same term. So do you know how to get t…

Comment: how to get gene list for given GO terms? by pengmin.wang.1 • 0

Hi, do you know how to get the gene list that have annotations from online GO database. For example, y <- as.list(org.Bt.egGO2ALLEGS), y co…

Comment: RSEM - tximport; where is effective_length information used? Implications for sc by Kelen • 0

Thank you. Gene-level analysis. I don't yet have a specific downstream pipeline in mind - I am trying to understand what limitations I migh…

Comment: FeaturePlot in scater by Guandong Shang ▴ 20

Thanks, this is what I want!

Comment: Using Age or other numerical variable to model expression in deseq2 by James W. MacDonald 60k

If you converted to a factor, the intercept is the reference level (you have to look at `levels(age)` to know what the reference is). If yo…

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