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dealing with outliers (deseq2)
maxcooks
outliers
zero
counts
DESeq2
updated 3 months ago by
Michael Love
37k • written 3 months ago by
andreia
• 0
0
votes
7
replies
3.4k
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DESeq estimateSizeFactors() is returning error "Error: all(!is.na(value)) is not TRUE"
deseq2
error
R
estimatesizefactors
zero
updated 11 weeks ago by
LW
• 0 • written 4.7 years ago by
abhishek.yedugondla
• 0
0
votes
1
reply
830
views
DESeq2 input data contains 0
deseq2
input files
zero
updated 4.9 years ago by
Michael Love
37k • written 4.9 years ago by
yanmin
• 0
3 results • Page
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Comment: why org.Hs.egGO2ALLEGS contain genes number difference from GO database?
by
pengmin.wang.1
• 0
yes, I also find genes in org.Bt.egGO2ALLEGS (bovine) are always less than online GO database in the same term. So do you know how to get t…
Comment: how to get gene list for given GO terms?
by
pengmin.wang.1
• 0
Hi, do you know how to get the gene list that have annotations from online GO database. For example, y <- as.list(org.Bt.egGO2ALLEGS), y co…
Comment: RSEM - tximport; where is effective_length information used? Implications for sc
by
Kelen
• 0
Thank you. Gene-level analysis. I don't yet have a specific downstream pipeline in mind - I am trying to understand what limitations I migh…
Comment: FeaturePlot in scater
by
Guandong Shang
▴ 20
Thanks, this is what I want!
Comment: Using Age or other numerical variable to model expression in deseq2
by
James W. MacDonald
60k
If you converted to a factor, the intercept is the reference level (you have to look at `levels(age)` to know what the reference is). If yo…
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A: paired and unpaired test at the same time with voom limma
Comment: Duplicate correlation with limma in before-after exposure experiment
Answer: Using Age or other numerical variable to model expression in deseq2
Comment: Using Age or other numerical variable to model expression in deseq2
Comment: Using Age or other numerical variable to model expression in deseq2
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