Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
1.0k
views
Comparison of results obtained from a subset of the data versus the complete dataset for a few selected genes.
DESeq2
updated 6 months ago by ★ 1.4k • written 6 months ago by ▴ 20
0
votes
1
reply
945
views
Regression Analysis between RNA-seq data and expression measured from ELISA
limma edger
5.2 years ago Bioinformatician_R ▴ 20
0
votes
1
reply
1.1k
views
Comment: C: What is the best deseq2 design for this situtation?
6.5 years ago Bioinformatician_R ▴ 20
3
votes
3
replies
1.1k
views
What is the best deseq2 design for this situtation?
deseq2
updated 6.5 years ago by 43k • written 6.5 years ago by ▴ 20
0
votes
1
reply
3.3k
views
Comment: C: Extracting sex specific differences between groups using DESeq2 interactions?
6.5 years ago Bioinformatician_R ▴ 20
1
vote
7
replies
3.3k
views
Extracting sex specific differences between groups using DESeq2 interactions?
deseq2
updated 3.6 years ago by 43k • written 6.5 years ago by ▴ 20
0
votes
0
replies
2.1k
views
Comment: C: Association analysis between gene expression and Phenotype
6.6 years ago Bioinformatician_R ▴ 20
5
votes
5
replies
2.1k
views
Association analysis between gene expression and Phenotype
rna singlecell limma
updated 6.6 years ago by ★ 29k • written 6.6 years ago by ▴ 20
0
votes
0
replies
2.1k
views
Comment: C: Association analysis between gene expression and Phenotype
6.6 years ago Bioinformatician_R ▴ 20
0
votes
0
replies
2.9k
views
Comment: C: DESeq: Question about contrast and group-wise subsetting.
7.9 years ago Bioinformatician_R ▴ 20
0
votes
1
reply
2.9k
views
Comment: C: DESeq: Question about contrast and group-wise subsetting.
7.9 years ago Bioinformatician_R ▴ 20
0
votes
1
reply
2.9k
views
Comment: C: DESeq: Question about contrast and group-wise subsetting.
7.9 years ago Bioinformatician_R ▴ 20
2
votes
6
replies
2.9k
views
DESeq: Question about contrast and group-wise subsetting.
deseq2 deseq
7.9 years ago Bioinformatician_R ▴ 20
0
votes
0
replies
1.0k
views
Comment: C: Appropriate DESeq2 design for multi-factor comparison within group?
7.9 years ago Bioinformatician_R ▴ 20
1
vote
2
replies
1.0k
views
Appropriate DESeq2 design for multi-factor comparison within group?
deseq2 deseq
updated 7.9 years ago by 43k • written 7.9 years ago by ▴ 20
0
votes
2
replies
5.4k
views
When is centering and scaling needed before doing hierarchical clustering?
clustering hierarchical clustering
written 8.2 years ago by ▴ 20
0
votes
1
reply
1.4k
views
Time series comparison with DESEQ2
RNA rnaseq deseq2
updated 8.2 years ago by 43k • written 8.2 years ago by ▴ 20
0
votes
1
reply
1.7k
views
RNA sequencing analysis for time point experiment using DeSeq2
deseq2 RNA rnaseq
updated 8.2 years ago by 43k • written 8.2 years ago by ▴ 20
6
votes
2
replies
6.7k
views
Cell type specific cell markers for Seurat based analysis.
single cell seurat clustering
updated 8.3 years ago by ▴ 40 • written 8.3 years ago by ▴ 20
0
votes
1
reply
2.5k
views
Comment: C: Regressing effect of treatment on RNA-seq expected count from rsem.
8.5 years ago Bioinformatician_R ▴ 20
0
votes
1
reply
2.5k
views
Comment: C: Regressing effect of treatment on RNA-seq expected count from rsem.
8.5 years ago Bioinformatician_R ▴ 20
0
votes
0
replies
2.5k
views
Comment: C: Regressing effect of treatment on RNA-seq expected count from rsem.
8.5 years ago Bioinformatician_R ▴ 20
3
votes
6
replies
2.5k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 8.5 years ago by 68k • written 8.5 years ago by ▴ 20
6
votes
5
replies
4.9k
views
Clustering differential expression results from voomWithQualityWeights
RNA limma rsem edgeR
updated 8.5 years ago by 53k • written 8.5 years ago by ▴ 20
0
votes
1
reply
4.9k
views
Comment: C: Using voomWithQualityWeights for differential expression analysis.
8.5 years ago Bioinformatician_R ▴ 20
0
votes
0
replies
4.9k
views
Comment: C: Using voomWithQualityWeights for differential expression analysis.
8.5 years ago Bioinformatician_R ▴ 20
0
votes
1
reply
1.6k
views
champ.load getting filtered RGChannelSet
champ methylation
updated 8.6 years ago by ▴ 90 • written 8.7 years ago by ▴ 20
0
votes
0
replies
1.9k
views
Comment: C: sc-RNA data analysis using scater
8.7 years ago Bioinformatician_R ▴ 20
1
vote
2
replies
1.9k
views
sc-RNA data analysis using scater
scater scrna
updated 8.7 years ago by ★ 29k • written 8.7 years ago by ▴ 20
0
votes
0
replies
2.5k
views
Comment: C: Scran normalization error with computeSumFactors
8.7 years ago Bioinformatician_R ▴ 20
3
votes
4
replies
2.5k
views
Scran normalization error with computeSumFactors
scran scater
updated 8.7 years ago by ★ 29k • written 8.7 years ago by ▴ 20
0
votes
2
replies
2.7k
views
Error using Bumphunter and Block finder using CHAMP
champ methylation 450k
8.9 years ago Bioinformatician_R ▴ 20
0
votes
0
replies
2.7k
views
Answer: A: Error using Bumphunter and Block finder using CHAMP
8.9 years ago Bioinformatician_R ▴ 20
0
votes
1
reply
2.1k
views
Error while using ChAMP
champ methylation illuminahumanmethylation450k.db illumina450k
updated 8.9 years ago by ▴ 90 • written 8.9 years ago by ▴ 20
0
votes
0
replies
22k
views
Comment: C: dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : repla
8.9 years ago Bioinformatician_R ▴ 20
0
votes
0
replies
1.3k
views
Creating a GenomicRatioSet with non minfi normalized data
minfi methylation illumina450k
9.0 years ago Bioinformatician_R ▴ 20
0
votes
0
replies
2.8k
views
Comment: C: Error with Minfi while using read.metharray.exp() and read.metharray function
9.0 years ago Bioinformatician_R ▴ 20
0
votes
1
reply
2.8k
views
Comment: C: Error with Minfi while using read.metharray.exp() and read.metharray function
9.0 years ago Bioinformatician_R ▴ 20
0
votes
4
replies
2.8k
views
Error with Minfi while using read.metharray.exp() and read.metharray function
minfi illumina450k methylation
9.0 years ago Bioinformatician_R ▴ 20
0
votes
1
reply
11k
views
Comment: C: Minfi error in reading Basename column
9.0 years ago Bioinformatician_R ▴ 20
40 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6