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783
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Regression Analysis between RNA-seq data and expression measured from ELISA
limma edger
4.4 years ago hrishi27n ▴ 20
0
votes
1
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931
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Comment: C: What is the best deseq2 design for this situtation?
5.7 years ago hrishi27n ▴ 20
3
votes
3
replies
931
views
What is the best deseq2 design for this situtation?
deseq2
updated 5.7 years ago by 43k • written 5.7 years ago by ▴ 20
0
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1
reply
2.8k
views
Comment: C: Extracting sex specific differences between groups using DESeq2 interactions?
5.7 years ago hrishi27n ▴ 20
1
vote
7
replies
2.8k
views
Extracting sex specific differences between groups using DESeq2 interactions?
deseq2
updated 2.8 years ago by 43k • written 5.7 years ago by ▴ 20
0
votes
0
replies
1.7k
views
Comment: C: Association analysis between gene expression and Phenotype
5.8 years ago hrishi27n ▴ 20
5
votes
5
replies
1.7k
views
Association analysis between gene expression and Phenotype
rna singlecell limma
updated 5.8 years ago by ★ 28k • written 5.8 years ago by ▴ 20
0
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0
replies
1.7k
views
Comment: C: Association analysis between gene expression and Phenotype
5.8 years ago hrishi27n ▴ 20
0
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0
replies
2.7k
views
Comment: C: DESeq: Question about contrast and group-wise subsetting.
7.1 years ago hrishi27n ▴ 20
0
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1
reply
2.7k
views
Comment: C: DESeq: Question about contrast and group-wise subsetting.
7.1 years ago hrishi27n ▴ 20
0
votes
1
reply
2.7k
views
Comment: C: DESeq: Question about contrast and group-wise subsetting.
7.1 years ago hrishi27n ▴ 20
2
votes
6
replies
2.7k
views
DESeq: Question about contrast and group-wise subsetting.
deseq2 deseq
7.1 years ago hrishi27n ▴ 20
0
votes
0
replies
906
views
Comment: C: Appropriate DESeq2 design for multi-factor comparison within group?
7.1 years ago hrishi27n ▴ 20
1
vote
2
replies
906
views
Appropriate DESeq2 design for multi-factor comparison within group?
deseq2 deseq
updated 7.1 years ago by 43k • written 7.1 years ago by ▴ 20
0
votes
2
replies
5.0k
views
When is centering and scaling needed before doing hierarchical clustering?
clustering hierarchical clustering
written 7.4 years ago by ▴ 20
0
votes
1
reply
1.2k
views
Time series comparison with DESEQ2
RNA rnaseq deseq2
updated 7.4 years ago by 43k • written 7.4 years ago by ▴ 20
0
votes
1
reply
1.5k
views
RNA sequencing analysis for time point experiment using DeSeq2
deseq2 RNA rnaseq
updated 7.4 years ago by 43k • written 7.4 years ago by ▴ 20
6
votes
2
replies
5.8k
views
Cell type specific cell markers for Seurat based analysis.
single cell seurat clustering
updated 7.5 years ago by ▴ 40 • written 7.5 years ago by ▴ 20
0
votes
1
reply
2.2k
views
Comment: C: Regressing effect of treatment on RNA-seq expected count from rsem.
7.7 years ago hrishi27n ▴ 20
0
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1
reply
2.2k
views
Comment: C: Regressing effect of treatment on RNA-seq expected count from rsem.
7.7 years ago hrishi27n ▴ 20
0
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0
replies
2.2k
views
Comment: C: Regressing effect of treatment on RNA-seq expected count from rsem.
7.7 years ago hrishi27n ▴ 20
3
votes
6
replies
2.2k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 7.7 years ago by 67k • written 7.7 years ago by ▴ 20
6
votes
5
replies
4.3k
views
Clustering differential expression results from voomWithQualityWeights
RNA limma rsem edgeR
updated 7.7 years ago by 52k • written 7.7 years ago by ▴ 20
0
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1
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4.3k
views
Comment: C: Using voomWithQualityWeights for differential expression analysis.
7.7 years ago hrishi27n ▴ 20
0
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0
replies
4.3k
views
Comment: C: Using voomWithQualityWeights for differential expression analysis.
7.7 years ago hrishi27n ▴ 20
0
votes
1
reply
1.5k
views
champ.load getting filtered RGChannelSet
champ methylation
updated 7.8 years ago by ▴ 90 • written 7.9 years ago by ▴ 20
0
votes
0
replies
1.6k
views
Comment: C: sc-RNA data analysis using scater
7.9 years ago hrishi27n ▴ 20
1
vote
2
replies
1.6k
views
sc-RNA data analysis using scater
scater scrna
updated 7.9 years ago by ★ 28k • written 7.9 years ago by ▴ 20
0
votes
0
replies
2.1k
views
Comment: C: Scran normalization error with computeSumFactors
7.9 years ago hrishi27n ▴ 20
3
votes
4
replies
2.1k
views
Scran normalization error with computeSumFactors
scran scater
updated 7.9 years ago by ★ 28k • written 7.9 years ago by ▴ 20
0
votes
2
replies
2.3k
views
Error using Bumphunter and Block finder using CHAMP
champ methylation 450k
8.1 years ago hrishi27n ▴ 20
0
votes
0
replies
2.3k
views
Answer: A: Error using Bumphunter and Block finder using CHAMP
8.1 years ago hrishi27n ▴ 20
0
votes
1
reply
1.8k
views
Error while using ChAMP
champ methylation illuminahumanmethylation450k.db illumina450k
updated 8.1 years ago by ▴ 90 • written 8.1 years ago by ▴ 20
0
votes
0
replies
20k
views
Comment: C: dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : repla
8.1 years ago hrishi27n ▴ 20
0
votes
0
replies
1.1k
views
Creating a GenomicRatioSet with non minfi normalized data
minfi methylation illumina450k
8.1 years ago hrishi27n ▴ 20
0
votes
0
replies
2.5k
views
Comment: C: Error with Minfi while using read.metharray.exp() and read.metharray function
8.1 years ago hrishi27n ▴ 20
0
votes
1
reply
2.5k
views
Comment: C: Error with Minfi while using read.metharray.exp() and read.metharray function
8.1 years ago hrishi27n ▴ 20
0
votes
4
replies
2.5k
views
Error with Minfi while using read.metharray.exp() and read.metharray function
minfi illumina450k methylation
8.1 years ago hrishi27n ▴ 20
0
votes
1
reply
9.9k
views
Comment: C: Minfi error in reading Basename column
8.2 years ago hrishi27n ▴ 20
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