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singlecell
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0
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93
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News:
Single-cell RNA-seq analysis with R/Bioconductor (online course)
SingleCellExperiment
SingleCell
27 days ago
info
▴ 10
0
votes
0
replies
243
views
Job:
Postdoctoral Research Associate in Computational Epigenomics
Phd
SingleCell
DNAMethylation
Shanghai
JobPosting
8 weeks ago
xiaolong
• 0
0
votes
0
replies
306
views
Job:
Postdoctoral fellowships in Spatial Omics and Single Cell Genomics at the University of Padova (IT)
SingleCell
Transcriptomics
SpatialDatasets
SpatialData
5 months ago
Silvio
• 0
0
votes
0
replies
523
views
Job:
Bioinformatics Spatial Omics and Proteomics Postdoc (Research Officer / Senior Research Officer) at WEHI (Melbourne, Australia)
Proteomics
JobPosting
SingleCell
Spatial
SpatialExperiment
8 months ago
Peter Hickey
▴ 740
3
votes
1
reply
987
views
'Seurat' package
singlecell
seurat
updated 18 months ago by
ATpoint
★ 4.5k • written 18 months ago by
Sooni
▴ 10
0
votes
1
reply
916
views
Choosing the right lower limit for emptyDrops
SingleCell
emptyDrops
10X
updated 18 months ago by
Peter Hickey
▴ 740 • written 18 months ago by
sandra.garces.19
• 0
0
votes
2
replies
814
views
Why my log2fcs are too high?
DESeq2
SingleCell
log2FC
18 months ago
paria.alipour
• 0
0
votes
2
replies
1.1k
views
Scaling and normalization by deconvolution of SMART-Seq 2 data
scran
Clustering
SingleCell
Normalization
19 months ago
Assa Yeroslaviz
★ 1.5k
1
vote
4
replies
963
views
Single-cell differential expression analysis with multiple samples
SingleCell
20 months ago
iaradsouza1
• 0
0
votes
8
replies
1.4k
views
fail to annotate chromosome data to single cell object
error
SingleCell
annotate
updated 11 months ago by
yw24418
• 0 • written 20 months ago by
sandra.garces.19
• 0
0
votes
0
replies
828
views
Job:
Open position in the CBIO lab: single-cell proteomics
Proteomics
SingleCell
JobPosting
MassSpectrometry
20 months ago
Laurent Gatto
1.6k
0
votes
3
replies
1.7k
views
Knee and Inflection of DropletUtils
SingleCell
updated 20 months ago by
ATpoint
★ 4.5k • written 20 months ago by
ankuuu
• 0
0
votes
1
reply
3.4k
views
DESeq2 after Seurat analysis on integrated datasets
DESeq2
SingleCell
GeneExpression
Seurat
updated 20 months ago by
ATpoint
★ 4.5k • written 20 months ago by
bio.boi
• 0
1
vote
1
reply
947
views
Pseudobulk running all groups together vs subsetting first
DESeq2
edgeR
SingleCell
updated 21 months ago by
Wolfgang Huber
★ 13k • written 21 months ago by
nhaus
▴ 70
0
votes
1
reply
834
views
Job:
Reopened: 'Omics data analyst for HPCBio, University of Illinois
SingleCell
Spatial
RNA-seq
21 months ago
Jenny Drnevich
★ 2.0k
0
votes
3
replies
1.1k
views
Tissue Level Differential Expression Analysis
DESeq2
DifferentialExpression
differentialex
Pseudobulk
SingleCell
updated 22 months ago by
Michael Love
42k • written 22 months ago by
skanda.hebbale
• 0
0
votes
1
reply
831
views
Job:
'Omics data analyst for HPCBio, University of Illinois
SingleCell
rnaseq
methylationArrayAnalysis
Spatial
written 23 months ago by
Jenny Drnevich
★ 2.0k
0
votes
3
replies
1.4k
views
Single-Cell Data Simulation from Bulk RNA-seq
SingleCell
RNASeq
RNASeqData
scRNAseq
updated 3 months ago by
Arun
• 0 • written 23 months ago by
irvin.ng
• 0
0
votes
1
reply
889
views
allele count data bioc object
SingleCell
SingleCellMultiModal
allele
updated 2.1 years ago by
Michael Love
42k • written 2.1 years ago by
oliver.crook
• 0
0
votes
0
replies
1.0k
views
Job:
Postdoctoral Fellow in Epigenomcis/Neurobiology (MGH/Harvard Medical School, Boston)
GenomicVariation
SingleCell
Autism
Neurogenesis
Epigenetics
2.1 years ago • updated 2.0 years ago
sudhir.thakurela
• 0
0
votes
0
replies
679
views
Gene Id duplicated
SingleCell
SingleCellData
updated 2.1 years ago by
ATpoint
★ 4.5k • written 2.1 years ago by
Romina
• 0
0
votes
1
reply
936
views
Set up "mock" cell type as the reference?
DESeq2
SingleCell
updated 2.1 years ago by
Michael Love
42k • written 2.1 years ago by
Yiqi
▴ 10
0
votes
0
replies
609
views
weighting sample group
monocle
SingleCell
DifferentialExpression
2.1 years ago
Sogand
• 0
2
votes
2
replies
981
views
How to detect LacZ tagged cells from single cell
SingleCell
SingleCellExperiment
SingleCellWorkflow
SingleCellData
2.2 years ago
k1m
▴ 20
0
votes
2
replies
1.3k
views
how to plot a fitting line on the testPseudotime
Pseudotime
testPseudotime
TSCAN
SingleCell
OSCA
2.2 years ago
Guandong Shang
▴ 40
2
votes
4
replies
1.1k
views
Summary of library size factor is all equal to one
SingleCell
SingleCellData
SingleCellWorkflow
SingleCellExperiment
2.2 years ago
Romina
• 0
0
votes
1
reply
1.4k
views
Error in .testForValidKeys(x, keys, keytype, fks) :
SingleCell
AnnotationDbi
updated 2.2 years ago by
James W. MacDonald
67k • written 2.2 years ago by
techgirl2022
• 0
0
votes
1
reply
1.6k
views
Error in running: classifySingleR from SingleR package
SingleR
SingleCell
updated 2.3 years ago by
ATpoint
★ 4.5k • written 2.3 years ago by
amit.korngut
• 0
1
vote
2
replies
1.7k
views
DESeq2 aggregated single cell data
pseudobulk
SingleCell
DESeq2
2.3 years ago
fluentin44
• 0
0
votes
0
replies
848
views
Differential expression with single cell data: any good two component (hurdle) models recently?
SingleCellWorkflow
DifferentialExpression
SingleCell
SingleCellMultiModal
MAST
2.4 years ago
Nik Tuzov
▴ 90
0
votes
0
replies
916
views
Performing DGE analysis with MAST on a variable with more than 2 levels
MAST
DEG
SingleCell
2.5 years ago
zroger499
• 0
2
votes
1
reply
897
views
() followed by [] within an argument in singlecell OSCA workflow
SingleCell
R
OSCA
updated 2.6 years ago by
jeroen.gilis
▴ 90 • written 2.6 years ago by
BioInfoBeginnerrr
• 0
2
votes
1
reply
2.0k
views
Convert AnnotatedDataFrame S4 object from GEO datasets to Seurat Object
biobase
SingleCellData
seurat
SingleCell
updated 2.8 years ago by
James W. MacDonald
67k • written 2.8 years ago by
NGS_enthusiast
• 0
0
votes
0
replies
947
views
Issues geting meaninfull results for single cell DGE using MAST
MAST
SingleCell
2.8 years ago
zroger499
• 0
0
votes
0
replies
1.1k
views
Job:
Postdoc Opening in Bioinformatics or Computational Biology
SpatialData
scRNAseq
SingleCell
Omixer
2.8 years ago
Sebastian Lewandowski
• 0
2
votes
2
replies
1.4k
views
velociraptor preparation
SingleCellExperiment
singlecell
velociraptor
scvelo
updated 2.9 years ago by
ATpoint
★ 4.5k • written 2.9 years ago by
Pietro
▴ 40
0
votes
0
replies
843
views
Job:
Research Scientists/Postdoctoral Candidates/Computational Biologists and Programmers excited about computational challenges in modeling CRISPR genome…
CRISPR
SingleCell
Genomics
3.1 years ago
lpinello
• 0
1
vote
2
replies
1.2k
views
Using limma duplicateCorrelation to account for donor/dataset effects in scRNA-Seq pseudobulk counts from multiple sources
limma
SingleCell
3.1 years ago
Andrew Pattison
• 0
0
votes
0
replies
862
views
Spike-In Cells for Normalization?
SpikeIn
SingleCell
3.2 years ago
mb1996
• 0
0
votes
0
replies
867
views
Job:
Computational postdoctoral fellow for cancer disparities research (Boston University)
DNASeq
RNASeq
SingleCell
3.3 years ago
camp
▴ 10
0
votes
0
replies
1.1k
views
Job:
Senior Bioinformatician - University of Alabama at Birmingham
JobPosting
Transcriptomics
SingleCell
RNA-seq
3.3 years ago
lianov
• 0
0
votes
1
reply
1.1k
views
Differentially expressed genes across three different conditions
MAST
SingleCell
diffGeneAnalysis
updated 3.4 years ago by
James W. MacDonald
67k • written 3.4 years ago by
sofia.puvogel
• 0
3
votes
2
replies
2.7k
views
Merging only those samples sequenced over multiple batches - scRNA-seq
SingleCell
SingleCellExperiment
scater
3.8 years ago • updated 3.7 years ago
camerond
• 0
0
votes
0
replies
1.1k
views
Job:
Computational Biologist at Denali Therapeutics
Transcriptomics
SingleCell
JobPosting
3.9 years ago
Steve Lianoglou
★ 13k
0
votes
2
replies
1.7k
views
Removal of cell cycle effect using batchelor::regressBatches() and proper usage of corrected UMI matrix
scRNAseq
batchelor
SingleCell
SingleCellExperiment
scran
3.9 years ago
jirkanov
• 0
3
votes
1
reply
2.1k
views
DESeq2 DE gene expression of scRNA-seq pseudobulk
DESeq2
SingleCell
updated 3.9 years ago by
Michael Love
42k • written 3.9 years ago by
Christian
▴ 10
0
votes
1
reply
1.0k
views
improving running time of runNMF
runNMF
scater
singlecell
SingleCellExperiment
updated 4.0 years ago by
Aaron Lun
★ 28k • written 4.0 years ago by
lirongrossmann
▴ 50
0
votes
0
replies
935
views
Creating a stable batch-corrected scRNA-Seq data with multiple datasets and multiple integrations
scater
singlecell
scran
BatchEffect
4.0 years ago
hamza_karakurt
▴ 60
2
votes
6
replies
2.5k
views
Discarding ambient RNA using estimateAmbience
emptyDrop
ambient
singlecell
estimateAmbience
updated 4.1 years ago by
Aaron Lun
★ 28k • written 4.1 years ago by
lirongrossmann
▴ 50
0
votes
6
replies
3.0k
views
Discrepancy between cell type and cluster using SingleCellExperiment and SingleR
singlecell
singlecellexperiment
umap
singleR
updated 4.2 years ago by
Aaron Lun
★ 28k • written 4.2 years ago by
lirongrossmann
▴ 80
50 results • Page
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