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Different results come from GO enrichment analysis with ENSEMBL ID and ENTREZID as keyTypes
clusterprofiler go enrichment functional enrichment
updated 6.9 years ago by ★ 1.2k • written 6.9 years ago by ▴ 20
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2.5k
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Comment: C: Representative gene expression value in one condition with several replicates
7.8 years ago Jack ▴ 20
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0
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2.5k
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Comment: C: Representative gene expression value in one condition with several replicates
7.8 years ago Jack ▴ 20
0
votes
0
replies
2.5k
views
Comment: C: Representative gene expression value in one condition with several replicates
7.8 years ago Jack ▴ 20
9
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6
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2.5k
views
Representative gene expression value in one condition with several replicates
rnaseq gene expression edger
updated 7.8 years ago by 53k • written 7.8 years ago by ▴ 20
1
vote
7
replies
2.0k
views
Strange distribution of logFC
edger deseq2 rnaseq differential gene expression
updated 7.9 years ago by ★ 29k • written 7.9 years ago by ▴ 20
0
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0
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2.0k
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Comment: C: Strange distribution of logFC
7.9 years ago Jack ▴ 20
0
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1
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2.0k
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Comment: C: Strange distribution of logFC
7.9 years ago Jack ▴ 20
0
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1
reply
2.0k
views
Comment: C: Strange distribution of logFC
7.9 years ago Jack ▴ 20
3
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1
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3.0k
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Explainnation of featureCounts in-built annotation?
rnaseq annotation featurecounts
updated 8.0 years ago by ★ 3.6k • written 8.0 years ago by ▴ 20
3
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1
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1.6k
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featureCounts in-built annotation doesn't match BioMart annotation?
rnaseq annotation featurecounts biomart
updated 8.0 years ago by 68k • written 8.0 years ago by ▴ 20
6
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6
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13k
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Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
rnaseq edger
8.0 years ago Jack ▴ 20
0
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0
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13k
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Comment: C: Why different filtering criteria using CPM to filter the RNA-seq count data in e
8.0 years ago Jack ▴ 20
0
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0
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13k
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Comment: C: Why different filtering criteria using CPM to filter the RNA-seq count data in e
8.0 years ago Jack ▴ 20
0
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0
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2.2k
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Comment: C: When doing differential gene analysis, why measuring genes based on exons? Can w
8.0 years ago Jack ▴ 20
0
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0
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2.2k
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Comment: C: When doing differential gene analysis, why measuring genes based on exons? Can w
8.0 years ago Jack ▴ 20
4
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8
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2.2k
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When doing differential gene analysis, why measuring genes based on exons? Can we measure genes based on CDS?
rnaseq featurecounts edger deseq2
updated 8.0 years ago by 53k • written 8.0 years ago by ▴ 20
0
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0
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13k
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Comment: C: Why different filtering criteria using CPM to filter the RNA-seq count data in e
8.0 years ago Jack ▴ 20
0
votes
1
reply
2.2k
views
Comment: C: When doing differential gene analysis, why measuring genes based on exons? Can w
8.0 years ago Jack ▴ 20
0
votes
1
reply
2.2k
views
Comment: C: When doing differential gene analysis, why measuring genes based on exons? Can w
8.0 years ago Jack ▴ 20
0
votes
2
replies
1.9k
views
GO analysis under-represented genes and over-represented (enrichment) down-regulated genes
go rnaseq clusterprofiler topgo
8.0 years ago Jack ▴ 20
0
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0
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1.9k
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Comment: C: GO analysis under-represented genes and over-represented (enrichment) down-regul
8.0 years ago Jack ▴ 20
0
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1
reply
3.4k
views
How many genes are appropriate for GO enrichment analysis
go annotate rna-seq clusterprofiler
updated 8.0 years ago by ▴ 120 • written 8.0 years ago by ▴ 20
26
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7
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13k
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Different logFC (log2foldchange) values for genes from limma-voom and other tools (edgeR and DESeq2)
limma deseq2 edger rnaseq
updated 8.0 years ago by 53k • written 8.0 years ago by ▴ 20
0
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0
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13k
views
Comment: C: Different logFC (log2foldchange) values for genes from limma-voom and other too
8.0 years ago Jack ▴ 20
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