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1
vote
3
replies
214
views
Different Shrunk Log2FC according with reference
DESeq2
updated 12 days ago by 41k • written 12 days ago by ▴ 20
0
votes
3
replies
205
views
Interaction Terms in DESeq2 - Shrinkage
DESeq2
updated 20 days ago by 41k • written 21 days ago by ▴ 20
2
votes
3
replies
304
views
DESeq2 - Plot Nr. Genes vs Variance explained in PCA
DESeq2
updated 6 weeks ago by 41k • written 6 weeks ago by ▴ 20
0
votes
2
replies
367
views
Biomart - upstream region of 'coding'
biomaRt
updated 7 months ago by ★ 6.5k • written 7 months ago by ▴ 20
0
votes
3
replies
546
views
p-value<0.05 for a gene with zero counts?
DESeq2
updated 9 months ago by 41k • written 9 months ago by ▴ 20
0
votes
3
replies
748
views
DESeq2 with nbinomGLM issues
DESeq2
updated 10 months ago by 41k • written 10 months ago by ▴ 20
0
votes
4
replies
825
views
DESEq2 Error: rows did not converge
DESeq2
10 months ago andrebolerbarros ▴ 20
1
vote
1
reply
551
views
Subsetting DESeq when different cell types
DESeq2 RNASeq
updated 14 months ago by ★ 4.1k • written 14 months ago by ▴ 20
0
votes
2
replies
868
views
PCA subset of genes vs DE
DESeq2 RNASeq
14 months ago andrebolerbarros ▴ 20
2
votes
1
reply
678
views
Subsetting a DESeq object - gene-wise dispersions
DESeq2
updated 21 months ago by ★ 4.1k • written 21 months ago by ▴ 20
3
votes
9
replies
2.3k
views
Warnings when using "ashr" in lfcshrinkage for DESeq2
RNASeq DESeq2
updated 16 months ago by • 0 • written 23 months ago by ▴ 20
0
votes
10
replies
928
views
Java & DESeq2
deseq2
updated 4.1 years ago by 41k • written 4.1 years ago by ▴ 20
1
vote
3
replies
640
views
estimateSizeFactors after subsetting?
deseq2
updated 4.9 years ago by 41k • written 4.9 years ago by ▴ 20
1
vote
3
replies
25k
views
z-score with DESeq2?
deseq2
updated 5.0 years ago by 41k • written 5.0 years ago by ▴ 20
3
votes
5
replies
1.7k
views
Using vegan::betadisper for determing if I subset my design for DESeq2
deseq2
updated 3.2 years ago by ▴ 250 • written 5.0 years ago by ▴ 20
1
vote
3
replies
1.6k
views
DESeq2 for QuantSeq data
deseq2
updated 5.1 years ago by ▴ 20 • written 5.1 years ago by ▴ 20
0
votes
1
reply
674
views
When should I use betaprior=T
deseq2
updated 5.4 years ago by 41k • written 5.4 years ago by ▴ 20
6
votes
8
replies
2.8k
views
alpha in lfcshrink?
deseq2
updated 3.0 years ago by ▴ 80 • written 5.5 years ago by ▴ 20
0
votes
3
replies
761
views
Pre-filtering results influence on downstream analysis
deseq2 rnaseq
updated 5.5 years ago by 41k • written 5.5 years ago by ▴ 20
0
votes
1
reply
1.5k
views
Import_biom with tree problem
phyloseq mothur 16s
5.5 years ago andrebolerbarros ▴ 20
2
votes
10
replies
3.2k
views
DESeq2 - Differences between plotCounts and normalized counts
deseq2
updated 6 months ago by 41k • written 5.7 years ago by ▴ 20
1
vote
9
replies
1.5k
views
DESeq2 - v1.18 different p-values from v1.20 (Is it minmu?)
deseq2
updated 5.8 years ago by 41k • written 5.8 years ago by ▴ 20
1
vote
5
replies
5.6k
views
DESEq2 - Change reference level change "Contrasts" results
deseq2
5.8 years ago andrebolerbarros ▴ 20
23 results • Page 1 of 1
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