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0
votes
1
reply
740
views
Comment: Comment: Different Shrunk Log2FC according with reference
18 months ago andrebolerbarros ▴ 20
1
vote
3
replies
740
views
Different Shrunk Log2FC according with reference
DESeq2
updated 18 months ago by 43k • written 18 months ago by ▴ 20
0
votes
1
reply
729
views
Comment: Comment: Interaction Terms in DESeq2 - Shrinkage
19 months ago andrebolerbarros ▴ 20
0
votes
3
replies
729
views
Interaction Terms in DESeq2 - Shrinkage
DESeq2
updated 19 months ago by 43k • written 19 months ago by ▴ 20
0
votes
1
reply
806
views
Comment: Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA
19 months ago andrebolerbarros ▴ 20
2
votes
3
replies
806
views
DESeq2 - Plot Nr. Genes vs Variance explained in PCA
DESeq2
updated 19 months ago by 43k • written 20 months ago by ▴ 20
0
votes
0
replies
963
views
Comment: Comment: Biomart - upstream region of 'coding'
2.2 years ago andrebolerbarros ▴ 20
0
votes
2
replies
963
views
Biomart - upstream region of 'coding'
biomaRt
updated 2.2 years ago by ★ 6.6k • written 2.2 years ago by ▴ 20
0
votes
1
reply
902
views
Comment: Comment: p-value<0.05 for a gene with zero counts?
2.3 years ago andrebolerbarros ▴ 20
0
votes
3
replies
902
views
p-value<0.05 for a gene with zero counts?
DESeq2
updated 2.3 years ago by 43k • written 2.3 years ago by ▴ 20
0
votes
3
replies
1.4k
views
DESeq2 with nbinomGLM issues
DESeq2
updated 2.4 years ago by 43k • written 2.4 years ago by ▴ 20
0
votes
0
replies
1.4k
views
Comment: Comment: DESeq2 with nbinomGLM issues
2.4 years ago andrebolerbarros ▴ 20
0
votes
0
replies
1.5k
views
Comment: Comment: DESEq2 Error: rows did not converge
2.4 years ago andrebolerbarros ▴ 20
0
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1
reply
1.5k
views
Comment: Comment: DESEq2 Error: rows did not converge
2.4 years ago andrebolerbarros ▴ 20
0
votes
4
replies
1.5k
views
DESEq2 Error: rows did not converge
DESeq2
2.4 years ago andrebolerbarros ▴ 20
1
vote
1
reply
950
views
Subsetting DESeq when different cell types
DESeq2 RNASeq
updated 2.7 years ago by ★ 5.0k • written 2.7 years ago by ▴ 20
0
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0
replies
1.4k
views
Comment: Comment: PCA subset of genes vs DE
2.7 years ago andrebolerbarros ▴ 20
0
votes
3
replies
1.4k
views
PCA subset of genes vs DE
DESeq2 RNASeq
written 2.7 years ago by ▴ 20
2
votes
1
reply
1.0k
views
Subsetting a DESeq object - gene-wise dispersions
DESeq2
updated 3.3 years ago by ★ 5.0k • written 3.3 years ago by ▴ 20
0
votes
1
reply
3.2k
views
Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
3.5 years ago andrebolerbarros ▴ 20
3
votes
9
replies
3.2k
views
Warnings when using "ashr" in lfcshrinkage for DESeq2
RNASeq DESeq2
updated 2.9 years ago by • 0 • written 3.5 years ago by ▴ 20
0
votes
0
replies
3.2k
views
Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
3.5 years ago andrebolerbarros ▴ 20
0
votes
1
reply
3.2k
views
Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
3.5 years ago andrebolerbarros ▴ 20
0
votes
1
reply
2.2k
views
Comment: Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
4.7 years ago andrebolerbarros ▴ 20
0
votes
1
reply
1.4k
views
Comment: C: Java & DESeq2
5.6 years ago andrebolerbarros ▴ 20
0
votes
1
reply
1.4k
views
Comment: C: Java & DESeq2
5.6 years ago andrebolerbarros ▴ 20
0
votes
0
replies
1.4k
views
Comment: C: Java & DESeq2
5.6 years ago andrebolerbarros ▴ 20
0
votes
2
replies
1.4k
views
Comment: C: Java & DESeq2
5.6 years ago andrebolerbarros ▴ 20
0
votes
1
reply
1.4k
views
Comment: C: Java & DESeq2
5.6 years ago andrebolerbarros ▴ 20
0
votes
10
replies
1.4k
views
Java & DESeq2
deseq2
updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 20
0
votes
1
reply
29k
views
Comment: C: z-score with DESeq2?
6.2 years ago andrebolerbarros ▴ 20
0
votes
0
replies
948
views
Comment: C: estimateSizeFactors after subsetting?
6.4 years ago andrebolerbarros ▴ 20
1
vote
3
replies
948
views
estimateSizeFactors after subsetting?
deseq2
updated 6.4 years ago by 43k • written 6.4 years ago by ▴ 20
1
vote
3
replies
29k
views
z-score with DESeq2?
deseq2
updated 6.5 years ago by 43k • written 6.5 years ago by ▴ 20
0
votes
1
reply
2.2k
views
Comment: C: Using vegan::betadisper for determing if I subset my design for DESeq2
6.5 years ago andrebolerbarros ▴ 20
3
votes
5
replies
2.2k
views
Using vegan::betadisper for determing if I subset my design for DESeq2
deseq2
updated 4.7 years ago by ▴ 270 • written 6.5 years ago by ▴ 20
0
votes
1
reply
2.3k
views
Comment: C: DESeq2 for QuantSeq data
6.6 years ago andrebolerbarros ▴ 20
1
vote
3
replies
2.3k
views
DESeq2 for QuantSeq data
deseq2
updated 6.6 years ago by ▴ 20 • written 6.6 years ago by ▴ 20
0
votes
1
reply
952
views
When should I use betaprior=T
deseq2
updated 6.9 years ago by 43k • written 6.9 years ago by ▴ 20
6
votes
8
replies
3.9k
views
alpha in lfcshrink?
deseq2
updated 4.5 years ago by ▴ 80 • written 7.0 years ago by ▴ 20
0
votes
1
reply
1.0k
views
Comment: C: Pre-filtering results influence on downstream analysis
7.0 years ago andrebolerbarros ▴ 20
0
votes
3
replies
1.0k
views
Pre-filtering results influence on downstream analysis
deseq2 rnaseq
updated 7.0 years ago by 43k • written 7.0 years ago by ▴ 20
0
votes
0
replies
2.1k
views
Comment: C: Import_biom with tree problem
7.0 years ago andrebolerbarros ▴ 20
0
votes
1
reply
2.1k
views
Import_biom with tree problem
phyloseq mothur 16s
7.1 years ago andrebolerbarros ▴ 20
0
votes
0
replies
5.2k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
7.2 years ago andrebolerbarros ▴ 20
0
votes
2
replies
5.2k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
7.2 years ago andrebolerbarros ▴ 20
0
votes
1
reply
5.2k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
7.2 years ago andrebolerbarros ▴ 20
0
votes
1
reply
5.2k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
7.2 years ago andrebolerbarros ▴ 20
2
votes
10
replies
5.2k
views
DESeq2 - Differences between plotCounts and normalized counts
deseq2
updated 2.1 years ago by 43k • written 7.2 years ago by ▴ 20
0
votes
0
replies
2.0k
views
Comment: C: DESeq2 - v1.18 different p-values from v1.20 (Is it minmu?)
7.3 years ago andrebolerbarros ▴ 20
58 results • Page 1 of 2
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