Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
386
views
Comment: Comment: Different Shrunk Log2FC according with reference
4 months ago andrebolerbarros ▴ 20
1
vote
3
replies
386
views
Different Shrunk Log2FC according with reference
DESeq2
updated 4 months ago by 42k • written 4 months ago by ▴ 20
0
votes
1
reply
360
views
Comment: Comment: Interaction Terms in DESeq2 - Shrinkage
5 months ago andrebolerbarros ▴ 20
0
votes
3
replies
360
views
Interaction Terms in DESeq2 - Shrinkage
DESeq2
updated 5 months ago by 42k • written 5 months ago by ▴ 20
0
votes
1
reply
436
views
Comment: Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA
6 months ago andrebolerbarros ▴ 20
2
votes
3
replies
436
views
DESeq2 - Plot Nr. Genes vs Variance explained in PCA
DESeq2
updated 6 months ago by 42k • written 6 months ago by ▴ 20
0
votes
0
replies
565
views
Comment: Comment: Biomart - upstream region of 'coding'
12 months ago andrebolerbarros ▴ 20
0
votes
2
replies
565
views
Biomart - upstream region of 'coding'
biomaRt
updated 12 months ago by ★ 6.5k • written 12 months ago by ▴ 20
0
votes
1
reply
683
views
Comment: Comment: p-value<0.05 for a gene with zero counts?
14 months ago andrebolerbarros ▴ 20
0
votes
3
replies
683
views
p-value<0.05 for a gene with zero counts?
DESeq2
updated 14 months ago by 42k • written 14 months ago by ▴ 20
0
votes
3
replies
992
views
DESeq2 with nbinomGLM issues
DESeq2
updated 15 months ago by 42k • written 15 months ago by ▴ 20
0
votes
0
replies
992
views
Comment: Comment: DESeq2 with nbinomGLM issues
15 months ago andrebolerbarros ▴ 20
0
votes
0
replies
1.0k
views
Comment: Comment: DESEq2 Error: rows did not converge
15 months ago andrebolerbarros ▴ 20
0
votes
1
reply
1.0k
views
Comment: Comment: DESEq2 Error: rows did not converge
15 months ago andrebolerbarros ▴ 20
0
votes
4
replies
1.0k
views
DESEq2 Error: rows did not converge
DESeq2
15 months ago andrebolerbarros ▴ 20
1
vote
1
reply
690
views
Subsetting DESeq when different cell types
DESeq2 RNASeq
updated 18 months ago by ★ 4.4k • written 18 months ago by ▴ 20
0
votes
0
replies
976
views
Comment: Comment: PCA subset of genes vs DE
18 months ago andrebolerbarros ▴ 20
0
votes
2
replies
976
views
PCA subset of genes vs DE
DESeq2 RNASeq
18 months ago andrebolerbarros ▴ 20
2
votes
1
reply
788
views
Subsetting a DESeq object - gene-wise dispersions
DESeq2
updated 2.1 years ago by ★ 4.4k • written 2.1 years ago by ▴ 20
0
votes
1
reply
2.6k
views
Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
2.3 years ago andrebolerbarros ▴ 20
3
votes
9
replies
2.6k
views
Warnings when using "ashr" in lfcshrinkage for DESeq2
RNASeq DESeq2
updated 20 months ago by • 0 • written 2.3 years ago by ▴ 20
0
votes
0
replies
2.6k
views
Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
2.3 years ago andrebolerbarros ▴ 20
0
votes
1
reply
2.6k
views
Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
2.3 years ago andrebolerbarros ▴ 20
0
votes
1
reply
1.9k
views
Comment: Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
3.6 years ago andrebolerbarros ▴ 20
0
votes
1
reply
1.1k
views
Comment: C: Java & DESeq2
4.4 years ago andrebolerbarros ▴ 20
0
votes
1
reply
1.1k
views
Comment: C: Java & DESeq2
4.4 years ago andrebolerbarros ▴ 20
0
votes
0
replies
1.1k
views
Comment: C: Java & DESeq2
4.4 years ago andrebolerbarros ▴ 20
0
votes
2
replies
1.1k
views
Comment: C: Java & DESeq2
4.4 years ago andrebolerbarros ▴ 20
0
votes
1
reply
1.1k
views
Comment: C: Java & DESeq2
4.4 years ago andrebolerbarros ▴ 20
0
votes
10
replies
1.1k
views
Java & DESeq2
deseq2
updated 4.4 years ago by 42k • written 4.4 years ago by ▴ 20
0
votes
1
reply
27k
views
Comment: C: z-score with DESeq2?
5.1 years ago andrebolerbarros ▴ 20
0
votes
0
replies
731
views
Comment: C: estimateSizeFactors after subsetting?
5.2 years ago andrebolerbarros ▴ 20
1
vote
3
replies
731
views
estimateSizeFactors after subsetting?
deseq2
updated 5.2 years ago by 42k • written 5.2 years ago by ▴ 20
1
vote
3
replies
27k
views
z-score with DESeq2?
deseq2
updated 5.4 years ago by 42k • written 5.4 years ago by ▴ 20
0
votes
1
reply
1.9k
views
Comment: C: Using vegan::betadisper for determing if I subset my design for DESeq2
5.4 years ago andrebolerbarros ▴ 20
3
votes
5
replies
1.9k
views
Using vegan::betadisper for determing if I subset my design for DESeq2
deseq2
updated 3.6 years ago by ▴ 250 • written 5.4 years ago by ▴ 20
0
votes
1
reply
1.8k
views
Comment: C: DESeq2 for QuantSeq data
5.5 years ago andrebolerbarros ▴ 20
1
vote
3
replies
1.8k
views
DESeq2 for QuantSeq data
deseq2
updated 5.5 years ago by ▴ 20 • written 5.5 years ago by ▴ 20
0
votes
1
reply
758
views
When should I use betaprior=T
deseq2
updated 5.8 years ago by 42k • written 5.8 years ago by ▴ 20
6
votes
8
replies
3.1k
views
alpha in lfcshrink?
deseq2
updated 3.4 years ago by ▴ 80 • written 5.8 years ago by ▴ 20
0
votes
1
reply
848
views
Comment: C: Pre-filtering results influence on downstream analysis
5.8 years ago andrebolerbarros ▴ 20
0
votes
3
replies
848
views
Pre-filtering results influence on downstream analysis
deseq2 rnaseq
updated 5.8 years ago by 42k • written 5.8 years ago by ▴ 20
0
votes
0
replies
1.7k
views
Comment: C: Import_biom with tree problem
5.9 years ago andrebolerbarros ▴ 20
0
votes
1
reply
1.7k
views
Import_biom with tree problem
phyloseq mothur 16s
5.9 years ago andrebolerbarros ▴ 20
0
votes
0
replies
3.8k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
6.1 years ago andrebolerbarros ▴ 20
0
votes
2
replies
3.8k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
6.1 years ago andrebolerbarros ▴ 20
0
votes
1
reply
3.8k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
6.1 years ago andrebolerbarros ▴ 20
0
votes
1
reply
3.8k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
6.1 years ago andrebolerbarros ▴ 20
2
votes
10
replies
3.8k
views
DESeq2 - Differences between plotCounts and normalized counts
deseq2
updated 11 months ago by 42k • written 6.1 years ago by ▴ 20
0
votes
0
replies
1.6k
views
Comment: C: DESeq2 - v1.18 different p-values from v1.20 (Is it minmu?)
6.1 years ago andrebolerbarros ▴ 20
58 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6