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0
votes
1
reply
105
views
Comment: Comment: Different Shrunk Log2FC according with reference
2 days ago andrebolerbarros ▴ 20
1
vote
3
replies
105
views
Different Shrunk Log2FC according with reference
DESeq2
updated 1 day ago by 41k • written 2 days ago by ▴ 20
0
votes
1
reply
176
views
Comment: Comment: Interaction Terms in DESeq2 - Shrinkage
10 days ago andrebolerbarros ▴ 20
0
votes
3
replies
176
views
Interaction Terms in DESeq2 - Shrinkage
DESeq2
updated 9 days ago by 41k • written 10 days ago by ▴ 20
0
votes
1
reply
287
views
Comment: Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA
5 weeks ago andrebolerbarros ▴ 20
2
votes
3
replies
287
views
DESeq2 - Plot Nr. Genes vs Variance explained in PCA
DESeq2
updated 5 weeks ago by 41k • written 5 weeks ago by ▴ 20
0
votes
0
replies
355
views
Comment: Comment: Biomart - upstream region of 'coding'
7 months ago andrebolerbarros ▴ 20
0
votes
2
replies
355
views
Biomart - upstream region of 'coding'
biomaRt
updated 7 months ago by ★ 6.5k • written 7 months ago by ▴ 20
0
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1
reply
541
views
Comment: Comment: p-value<0.05 for a gene with zero counts?
9 months ago andrebolerbarros ▴ 20
0
votes
3
replies
541
views
p-value<0.05 for a gene with zero counts?
DESeq2
updated 9 months ago by 41k • written 9 months ago by ▴ 20
0
votes
3
replies
730
views
DESeq2 with nbinomGLM issues
DESeq2
updated 10 months ago by 41k • written 10 months ago by ▴ 20
0
votes
0
replies
730
views
Comment: Comment: DESeq2 with nbinomGLM issues
10 months ago andrebolerbarros ▴ 20
0
votes
0
replies
810
views
Comment: Comment: DESEq2 Error: rows did not converge
10 months ago andrebolerbarros ▴ 20
0
votes
1
reply
810
views
Comment: Comment: DESEq2 Error: rows did not converge
10 months ago andrebolerbarros ▴ 20
0
votes
4
replies
810
views
DESEq2 Error: rows did not converge
DESeq2
10 months ago andrebolerbarros ▴ 20
1
vote
1
reply
542
views
Subsetting DESeq when different cell types
DESeq2 RNASeq
updated 13 months ago by ★ 4.0k • written 14 months ago by ▴ 20
0
votes
0
replies
854
views
Comment: Comment: PCA subset of genes vs DE
14 months ago andrebolerbarros ▴ 20
0
votes
2
replies
854
views
PCA subset of genes vs DE
DESeq2 RNASeq
14 months ago andrebolerbarros ▴ 20
2
votes
1
reply
672
views
Subsetting a DESeq object - gene-wise dispersions
DESeq2
updated 21 months ago by ★ 4.0k • written 21 months ago by ▴ 20
0
votes
1
reply
2.3k
views
Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
23 months ago andrebolerbarros ▴ 20
3
votes
9
replies
2.3k
views
Warnings when using "ashr" in lfcshrinkage for DESeq2
RNASeq DESeq2
updated 16 months ago by • 0 • written 23 months ago by ▴ 20
0
votes
0
replies
2.3k
views
Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
23 months ago andrebolerbarros ▴ 20
0
votes
1
reply
2.3k
views
Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
23 months ago andrebolerbarros ▴ 20
0
votes
1
reply
1.7k
views
Comment: Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
3.2 years ago andrebolerbarros ▴ 20
0
votes
1
reply
920
views
Comment: C: Java & DESeq2
4.0 years ago andrebolerbarros ▴ 20
0
votes
1
reply
920
views
Comment: C: Java & DESeq2
4.0 years ago andrebolerbarros ▴ 20
0
votes
0
replies
920
views
Comment: C: Java & DESeq2
4.0 years ago andrebolerbarros ▴ 20
0
votes
2
replies
920
views
Comment: C: Java & DESeq2
4.0 years ago andrebolerbarros ▴ 20
0
votes
1
reply
920
views
Comment: C: Java & DESeq2
4.0 years ago andrebolerbarros ▴ 20
0
votes
10
replies
920
views
Java & DESeq2
deseq2
updated 4.0 years ago by 41k • written 4.0 years ago by ▴ 20
0
votes
1
reply
25k
views
Comment: C: z-score with DESeq2?
4.7 years ago andrebolerbarros ▴ 20
0
votes
0
replies
634
views
Comment: C: estimateSizeFactors after subsetting?
4.8 years ago andrebolerbarros ▴ 20
1
vote
3
replies
634
views
estimateSizeFactors after subsetting?
deseq2
updated 4.8 years ago by 41k • written 4.8 years ago by ▴ 20
1
vote
3
replies
25k
views
z-score with DESeq2?
deseq2
updated 5.0 years ago by 41k • written 5.0 years ago by ▴ 20
0
votes
1
reply
1.7k
views
Comment: C: Using vegan::betadisper for determing if I subset my design for DESeq2
5.0 years ago andrebolerbarros ▴ 20
3
votes
5
replies
1.7k
views
Using vegan::betadisper for determing if I subset my design for DESeq2
deseq2
updated 3.2 years ago by ▴ 250 • written 5.0 years ago by ▴ 20
0
votes
1
reply
1.6k
views
Comment: C: DESeq2 for QuantSeq data
5.1 years ago andrebolerbarros ▴ 20
1
vote
3
replies
1.6k
views
DESeq2 for QuantSeq data
deseq2
updated 5.1 years ago by ▴ 20 • written 5.1 years ago by ▴ 20
0
votes
1
reply
664
views
When should I use betaprior=T
deseq2
updated 5.4 years ago by 41k • written 5.4 years ago by ▴ 20
6
votes
8
replies
2.8k
views
alpha in lfcshrink?
deseq2
updated 3.0 years ago by ▴ 80 • written 5.4 years ago by ▴ 20
0
votes
1
reply
756
views
Comment: C: Pre-filtering results influence on downstream analysis
5.4 years ago andrebolerbarros ▴ 20
0
votes
3
replies
756
views
Pre-filtering results influence on downstream analysis
deseq2 rnaseq
updated 5.4 years ago by 41k • written 5.4 years ago by ▴ 20
0
votes
0
replies
1.5k
views
Comment: C: Import_biom with tree problem
5.5 years ago andrebolerbarros ▴ 20
0
votes
1
reply
1.5k
views
Import_biom with tree problem
phyloseq mothur 16s
5.5 years ago andrebolerbarros ▴ 20
0
votes
0
replies
3.2k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
5.7 years ago andrebolerbarros ▴ 20
0
votes
2
replies
3.2k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
5.7 years ago andrebolerbarros ▴ 20
0
votes
1
reply
3.2k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
5.7 years ago andrebolerbarros ▴ 20
0
votes
1
reply
3.2k
views
Comment: C: DESeq2 - Differences between plotCounts and normalized counts
5.7 years ago andrebolerbarros ▴ 20
2
votes
10
replies
3.2k
views
DESeq2 - Differences between plotCounts and normalized counts
deseq2
updated 6 months ago by 41k • written 5.7 years ago by ▴ 20
0
votes
0
replies
1.4k
views
Comment: C: DESeq2 - v1.18 different p-values from v1.20 (Is it minmu?)
5.7 years ago andrebolerbarros ▴ 20
58 results • Page 1 of 2
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