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questions
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votes
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1.1k
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Where is 'constructOligoSetFrom' or 'constructOligoSetListFrom' function?
crlmm
vanillaice
8.9 years ago
Shi, Tao
▴ 720
0
votes
2
replies
2.0k
views
reading .idat files using genotype.Illumina in crlmm
crlmm
idat
updated 8.9 years ago by
Matthew Ritchie
▴ 1000 • written 8.9 years ago by
Shi, Tao
▴ 720
0
votes
2
replies
1.1k
views
Results changed after DESeq2 upgrade
deseq2
updated 9.2 years ago by
Michael Love
41k • written 9.2 years ago by
Shi, Tao
▴ 720
0
votes
3
replies
1.4k
views
comisc in biomart
biomaRt
9.3 years ago
Shi, Tao
▴ 720
0
votes
1
reply
1.4k
views
strange log2FoldChange estimates
RNASeq
DOSE
DESeq2
RNASeq
DOSE
DESeq2
9.7 years ago
Shi, Tao
▴ 720
0
votes
4
replies
1.8k
views
multiple comparison adjustment of p values in LIMMA
limma
limma
updated 10.6 years ago by
Gordon Smyth
50k • written 10.6 years ago by
Shi, Tao
▴ 720
0
votes
2
replies
5.6k
views
limma: NA coefficients due to missing values
limma
limma
updated 11.0 years ago by
Gordon Smyth
50k • written 11.0 years ago by
Shi, Tao
▴ 720
0
votes
2
replies
935
views
arrayQualityMetrics: huge object size!?
updated 12.2 years ago by
Wolfgang Huber
★ 13k • written 12.2 years ago by
Shi, Tao
▴ 720
0
votes
0
replies
944
views
Fw: a bug in heatmap.plus?
12.9 years ago
Shi, Tao
▴ 720
0
votes
0
replies
704
views
getSequence ensmebl biomaRt
biomaRt
biomaRt
13.0 years ago
Shi, Tao
▴ 720
0
votes
3
replies
1.2k
views
desktop workstation configuration
updated 13.4 years ago by
Thomas Girke
★ 1.7k • written 13.4 years ago by
Shi, Tao
▴ 720
0
votes
2
replies
1.3k
views
question on "uniCox"
updated 13.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.5 years ago by
Shi, Tao
▴ 720
0
votes
2
replies
1.3k
views
Cy5: methylated or unmethylated?
methylumi
methylumi
updated 13.6 years ago by
Sean Davis
21k • written 13.6 years ago by
Shi, Tao
▴ 720
0
votes
9
replies
2.1k
views
illumina Infinium HumanMethylation27 detection-p-value
updated 13.7 years ago by
Pan Du
★ 1.2k • written 13.7 years ago by
Shi, Tao
▴ 720
0
votes
3
replies
927
views
problems when using "readCcg" in "affxparser" to parse .CNCHP file
affy
affy
updated 14.3 years ago by
cstrato
★ 3.9k • written 14.3 years ago by
Shi, Tao
▴ 720
0
votes
2
replies
1.2k
views
biomaRt doesn't load RCurl automatically
SNP
biomaRt
SNP
biomaRt
15.5 years ago
Shi, Tao
▴ 720
0
votes
4
replies
2.1k
views
biomaRt get exon intron structure of a transcrit
Cancer
biomaRt
Cancer
biomaRt
15.5 years ago
Shi, Tao
▴ 720
0
votes
3
replies
835
views
gene count in a GO term
affy
affy
15.6 years ago
Shi, Tao
▴ 720
0
votes
2
replies
949
views
"start" filter in biomaRt
15.7 years ago
Shi, Tao
▴ 720
0
votes
1
reply
782
views
GOTERM in GO.db returns NULL
GO
GO
updated 15.8 years ago by
Marc Carlson
★ 7.2k • written 15.8 years ago by
Shi, Tao
▴ 720
0
votes
2
replies
1.6k
views
biomaRt:getBM error when query is large
GO
GO
15.8 years ago
Shi, Tao
▴ 720
1
vote
2
replies
1.4k
views
create Affymetrix .chp file for viewing in affy Integrated Genome Browser
affy
affxparser
affy
affxparser
16.0 years ago
Shi, Tao
▴ 720
0
votes
1
reply
977
views
create Affymetrix .chp file for viewing in affy Integrated Genome Browser
affy
affy
updated 16.0 years ago by
Kasper Daniel Hansen
★ 6.5k • written 16.0 years ago by
Shi, Tao
▴ 720
0
votes
1
reply
1.4k
views
nested design in limma? -- revisit
limma
limma
updated 17.3 years ago by
Gordon Smyth
50k • written 17.3 years ago by
Shi, Tao
▴ 720
0
votes
3
replies
1.1k
views
boxplot of MM data and normalization
Normalization
affy
Normalization
affy
17.6 years ago
Shi, Tao
▴ 720
0
votes
6
replies
965
views
probe level annotation
probe
probe
17.6 years ago
Shi, Tao
▴ 720
0
votes
2
replies
1.2k
views
a question for Metadata package: hgu133a
Leukemia
Leukemia
updated 17.6 years ago by
Nianhua Li
▴ 870 • written 17.6 years ago by
Shi, Tao
▴ 720
0
votes
4
replies
1.1k
views
conflict between ROC and Hmisc or Design?
updated 18.3 years ago by
rgentleman
★ 5.5k • written 18.3 years ago by
Shi, Tao
▴ 720
0
votes
4
replies
635
views
srcUrl function in AnnBuilder
updated 18.4 years ago by
Seth Falcon
★ 7.4k • written 18.4 years ago by
Shi, Tao
▴ 720
0
votes
5
replies
1.4k
views
annotations for Codelink arrays
Annotation
codelink
Annotation
codelink
updated 18.6 years ago by
John Zhang
★ 2.9k • written 18.6 years ago by
Shi, Tao
▴ 720
0
votes
0
replies
1.1k
views
UPDATE: a problem with Metadat package: hgu133a2 ----- Fwd: RE: Should BE964473 be mapped to Hs. 333958 or Hs. 282260?
Annotation
GO
Cancer
hgu95av2
hu6800
probe
annotate
affy
graph
RBGL
GOstats
Annotation
18.6 years ago
Shi, Tao
▴ 720
0
votes
5
replies
906
views
a problem with Metadat package: hgu133a2
Annotation
Annotation
updated 18.6 years ago by
John Zhang
★ 2.9k • written 18.6 years ago by
Shi, Tao
▴ 720
0
votes
4
replies
967
views
GOHyperG for KEGG
updated 18.6 years ago by
Dick Beyer
★ 1.4k • written 18.7 years ago by
Shi, Tao
▴ 720
0
votes
6
replies
1.2k
views
.pdf files of GOstats documents
GOstats
GOstats
updated 19.2 years ago by
michael watson IAH-C
★ 3.4k • written 19.2 years ago by
Shi, Tao
▴ 720
0
votes
0
replies
1.2k
views
How can I get Heatmap using dChip clustering
Clustering
PROcess
Clustering
PROcess
19.5 years ago
Shi, Tao
▴ 720
0
votes
7
replies
1.3k
views
Try to run a lots of chips: 32 bits vs 64 bits
Normalization
PROcess
Normalization
PROcess
updated 21.2 years ago by
rgentleman
★ 5.5k • written 21.2 years ago by
Shi, Tao
▴ 720
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