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829
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Comment:
C: Convergence of betas, iterations arguments with nbinomialWaldTest
4.0 years ago
Mozart
▴ 30
2
votes
2
replies
829
views
Convergence of betas, iterations arguments with nbinomialWaldTest
deseq2
updated 4.0 years ago by
Michael Love
42k • written 4.0 years ago by
Mozart
▴ 30
0
votes
1
reply
909
views
SVA for visualisation purposes
sva
svaseq
surrogate variable analysis
updated 4.5 years ago by
James W. MacDonald
67k • written 4.5 years ago by
Mozart
▴ 30
0
votes
0
replies
20k
views
Comment:
C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
4.5 years ago
Mozart
▴ 30
1
vote
1
reply
20k
views
Comment:
C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
4.5 years ago
Mozart
▴ 30
2
votes
4
replies
5.2k
views
tximport, Kallisto and Deseq2 (quick answer)
kallisto
tximport
deseq2
counts
5.4 years ago • updated 4.5 years ago
Mozart
▴ 30
1
vote
6
replies
1.1k
views
Paired t-test with DESeq2
deseq2
updated 5.0 years ago by
swbarnes2
★ 1.4k • written 5.0 years ago by
Mozart
▴ 30
0
votes
1
reply
1.1k
views
Comment:
C: Paired t-test with DESeq2
5.0 years ago
Mozart
▴ 30
0
votes
0
replies
1.1k
views
Comment:
C: Paired t-test with DESeq2
5.0 years ago
Mozart
▴ 30
1
vote
1
reply
1.1k
views
inferential replicates in Kallisto when summarising values via tximport
tximport
updated 5.3 years ago by
Michael Love
42k • written 5.3 years ago by
Mozart
▴ 30
0
votes
0
replies
20k
views
Comment:
C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.3 years ago
Mozart
▴ 30
0
votes
1
reply
20k
views
Comment:
C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.3 years ago
Mozart
▴ 30
0
votes
2
replies
20k
views
Comment:
C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.3 years ago
Mozart
▴ 30
0
votes
0
replies
20k
views
Comment:
C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.3 years ago
Mozart
▴ 30
10
votes
20
replies
20k
views
Batch Effect in DESeq2, how to control, how to remove it, how to address biological question
deseq2
batch effect
batch
updated 2 days ago by
James W. MacDonald
67k • written 5.4 years ago by
Mozart
▴ 30
2
votes
1
reply
964
views
Multiple groups and two methods to analyse them with DESeq2
deseq2
updated 5.3 years ago by
Michael Love
42k • written 5.4 years ago by
Mozart
▴ 30
0
votes
1
reply
2.5k
views
Comment:
C: Principal components in DESeq2
5.4 years ago
Mozart
▴ 30
0
votes
1
reply
2.5k
views
Comment:
C: Principal components in DESeq2
5.4 years ago
Mozart
▴ 30
5
votes
5
replies
2.5k
views
Principal components in DESeq2
deseq2
5.4 years ago
Mozart
▴ 30
0
votes
0
replies
20k
views
Comment:
C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.4 years ago
Mozart
▴ 30
0
votes
1
reply
20k
views
Comment:
C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.4 years ago
Mozart
▴ 30
0
votes
0
replies
20k
views
Comment:
C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.4 years ago
Mozart
▴ 30
0
votes
1
reply
20k
views
Comment:
C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.4 years ago
Mozart
▴ 30
0
votes
0
replies
2.1k
views
Comment:
C: adapter trimming paired vs unpaired reads
5.4 years ago
Mozart
▴ 30
3
votes
1
reply
2.0k
views
Tximport and pseudo alignment with Kallisto
kallisto
tximport
deseq2
updated 5.4 years ago by
Michael Love
42k • written 5.4 years ago by
Mozart
▴ 30
0
votes
1
reply
858
views
DESeq2, how to deal with batch effect: t-test or design matrix?
deseq2
batch
sva
t-test
design matrix
updated 5.4 years ago by
Michael Love
42k • written 5.4 years ago by
Mozart
▴ 30
1
vote
2
replies
2.1k
views
adapter trimming paired vs unpaired reads
rna seq
trimmomatic
trimming
adapter trimming
paired analysis
5.4 years ago
Mozart
▴ 30
1
vote
0
replies
5.2k
views
Comment:
C: tximport, Kallisto and Deseq2 (quick answer)
5.4 years ago
Mozart
▴ 30
0
votes
1
reply
5.2k
views
Comment:
C: tximport, Kallisto and Deseq2 (quick answer)
5.4 years ago
Mozart
▴ 30
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