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866
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Comment: C: Convergence of betas, iterations arguments with nbinomialWaldTest
4.2 years ago Mozart ▴ 30
2
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2
replies
866
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Convergence of betas, iterations arguments with nbinomialWaldTest
deseq2
updated 4.2 years ago by 43k • written 4.2 years ago by ▴ 30
0
votes
1
reply
947
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SVA for visualisation purposes
sva svaseq surrogate variable analysis
updated 4.6 years ago by 67k • written 4.6 years ago by ▴ 30
0
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0
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21k
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Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
4.6 years ago Mozart ▴ 30
1
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1
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21k
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Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
4.6 years ago Mozart ▴ 30
2
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4
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5.4k
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tximport, Kallisto and Deseq2 (quick answer)
kallisto tximport deseq2 counts
5.6 years ago • updated 4.7 years ago Mozart ▴ 30
1
vote
6
replies
1.2k
views
Paired t-test with DESeq2
deseq2
updated 5.2 years ago by ★ 1.4k • written 5.2 years ago by ▴ 30
0
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1
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1.2k
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Comment: C: Paired t-test with DESeq2
5.2 years ago Mozart ▴ 30
0
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0
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1.2k
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Comment: C: Paired t-test with DESeq2
5.2 years ago Mozart ▴ 30
1
vote
1
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1.1k
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inferential replicates in Kallisto when summarising values via tximport
tximport
updated 5.5 years ago by 43k • written 5.5 years ago by ▴ 30
0
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0
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21k
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Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.5 years ago Mozart ▴ 30
0
votes
1
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21k
views
Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.5 years ago Mozart ▴ 30
0
votes
2
replies
21k
views
Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.5 years ago Mozart ▴ 30
0
votes
0
replies
21k
views
Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.5 years ago Mozart ▴ 30
10
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20
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21k
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Batch Effect in DESeq2, how to control, how to remove it, how to address biological question
deseq2 batch effect batch
updated 8 weeks ago by 67k • written 5.5 years ago by ▴ 30
2
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1
reply
1.0k
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Multiple groups and two methods to analyse them with DESeq2
deseq2
updated 5.5 years ago by 43k • written 5.5 years ago by ▴ 30
0
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1
reply
2.7k
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Comment: C: Principal components in DESeq2
5.5 years ago Mozart ▴ 30
0
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1
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2.7k
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Comment: C: Principal components in DESeq2
5.5 years ago Mozart ▴ 30
5
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5
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2.7k
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Principal components in DESeq2
deseq2
5.5 years ago Mozart ▴ 30
0
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0
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21k
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Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.5 years ago Mozart ▴ 30
0
votes
1
reply
21k
views
Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.5 years ago Mozart ▴ 30
0
votes
0
replies
21k
views
Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.5 years ago Mozart ▴ 30
0
votes
1
reply
21k
views
Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.5 years ago Mozart ▴ 30
0
votes
0
replies
2.2k
views
Comment: C: adapter trimming paired vs unpaired reads
5.5 years ago Mozart ▴ 30
3
votes
1
reply
2.0k
views
Tximport and pseudo alignment with Kallisto
kallisto tximport deseq2
updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 30
0
votes
1
reply
916
views
DESeq2, how to deal with batch effect: t-test or design matrix?
deseq2 batch sva t-test design matrix
updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 30
1
vote
2
replies
2.2k
views
adapter trimming paired vs unpaired reads
rna seq trimmomatic trimming adapter trimming paired analysis
5.6 years ago Mozart ▴ 30
1
vote
0
replies
5.4k
views
Comment: C: tximport, Kallisto and Deseq2 (quick answer)
5.6 years ago Mozart ▴ 30
0
votes
1
reply
5.4k
views
Comment: C: tximport, Kallisto and Deseq2 (quick answer)
5.6 years ago Mozart ▴ 30
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