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concatenating a proteome to use Biostrings pairwiseAlignment
Biostrings alignment
6.7 years ago Juliet Hannah ▴ 360
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1.7k
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Comment: C: Uniprot and UniProt.ws
6.7 years ago Juliet Hannah ▴ 360
2
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3
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1.7k
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Uniprot and UniProt.ws
Uniprot Annotation Identifiers
6.7 years ago Juliet Hannah ▴ 360
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2
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2.3k
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Help with error: 'pd.u133aaofav2 was not found in the BioConductor repository'.
pd.u133aaofav2
updated 8.5 years ago by ▴ 70 • written 9.0 years ago by ▴ 360
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1.5k
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Comment: C: using technical replicates to batch correct
9.4 years ago Juliet Hannah ▴ 360
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3
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1.5k
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using technical replicates to batch correct
batch effect
9.4 years ago Juliet Hannah ▴ 360
1
vote
1
reply
1.4k
views
affyPLM boxplots for subset of samples
affyPLM
updated 9.5 years ago by 68k • written 9.5 years ago by ▴ 360
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4.6k
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Comment: C: limma roast syntax and interpretation
updated 11.2 years ago by 53k • written 11.2 years ago by ▴ 360
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6
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4.6k
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limma roast syntax and interpretation
limma roast
updated 11.2 years ago by 53k • written 11.2 years ago by ▴ 360
3
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3
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2.9k
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limma roast syntax for overall anova
limma
updated 11.2 years ago by 53k • written 11.5 years ago by ▴ 360
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1
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2.9k
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Comment: C: limma roast syntax for overall anova
updated 11.2 years ago by 53k • written 11.5 years ago by ▴ 360
1
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6
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1.7k
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enrichment packages that accept t-stat (or related stat) as input
limma
updated 11.2 years ago by 53k • written 12.4 years ago by ▴ 360
0
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0
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1.7k
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Comment: C: enrichment packages that accept t-stat (or related stat) as input
updated 11.2 years ago by 53k • written 12.4 years ago by ▴ 360
0
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1
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1.7k
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Comment: C: enrichment packages that accept t-stat (or related stat) as input
updated 11.2 years ago by 53k • written 12.3 years ago by ▴ 360
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0
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2.4k
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Comment: C: GWAS with family data
11.7 years ago Juliet Hannah ▴ 360
0
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3
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2.2k
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help with SCAN.UPC and u133aaofav2
Annotation Annotation
updated 12.2 years ago by ▴ 600 • written 12.2 years ago by ▴ 360
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1
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2.2k
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Comment: C: help with SCAN.UPC and u133aaofav2
12.2 years ago Juliet Hannah ▴ 360
0
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12
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2.3k
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combining/merging several ExpressionSet objects from SCAN
updated 12.4 years ago by ▴ 870 • written 12.4 years ago by ▴ 360
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2
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2.3k
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Comment: C: combining/merging several ExpressionSet objects from SCAN
12.4 years ago Juliet Hannah ▴ 360
0
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1
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2.3k
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Comment: C: combining/merging several ExpressionSet objects from SCAN
12.4 years ago Juliet Hannah ▴ 360
0
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0
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1.1k
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snapCGH and clonesinfo
CGH limma snapCGH CGH limma snapCGH
12.6 years ago Juliet Hannah ▴ 360
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0
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1.3k
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Comment: C: proper way to handle small changes from different package versions
12.6 years ago Juliet Hannah ▴ 360
0
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1
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1.3k
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Comment: C: proper way to handle small changes from different package versions
12.6 years ago Juliet Hannah ▴ 360
0
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4
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1.3k
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proper way to handle small changes from different package versions
lumi lumi
updated 12.6 years ago by 68k • written 12.6 years ago by ▴ 360
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1
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953
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MA plots and assumptions
Normalization Visualization Normalization Visualization
updated 12.7 years ago by ★ 13k • written 12.7 years ago by ▴ 360
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2
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1.9k
views
spline example from limma user's guide
limma limma
updated 12.7 years ago by 53k • written 12.7 years ago by ▴ 360
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1
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3.0k
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Comment: C: statistical test for time course data
12.9 years ago Juliet Hannah ▴ 360
0
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2
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3.1k
views
strategy to match/align peptide sequence to protein
updated 13.0 years ago by 16k • written 13.0 years ago by ▴ 360
0
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1
reply
1.9k
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visualizing peptide alignments
updated 13.1 years ago by ▴ 970 • written 13.1 years ago by ▴ 360
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0
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2.0k
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Comment: C: creating GSEA files using biomart
13.3 years ago Juliet Hannah ▴ 360
0
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2
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2.0k
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creating GSEA files using biomart
affy biomaRt affy biomaRt
updated 13.3 years ago by ▴ 540 • written 13.3 years ago by ▴ 360
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2
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1.5k
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affy: batch completely confounded with treatment
sva sva
updated 13.4 years ago by ▴ 870 • written 13.4 years ago by ▴ 360
0
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1
reply
1.1k
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bioconductor implementations to find rank invariant genes
Normalization HTqPCR Normalization HTqPCR
updated 13.4 years ago by ★ 2.0k • written 13.4 years ago by ▴ 360
0
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2
replies
987
views
understanding multiples matches between probesets and entrezgene (biomart)
biomaRt biomaRt
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 360
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0
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1.0k
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Comment: C: normalizing only 2 affy samples
13.7 years ago Juliet Hannah ▴ 360
0
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3
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1.0k
views
normalizing only 2 affy samples
affy affy
updated 13.7 years ago by 68k • written 13.7 years ago by ▴ 360
0
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1
reply
2.0k
views
problems installing xcms package
cdf xcms cdf xcms
updated 13.8 years ago by ★ 8.2k • written 13.8 years ago by ▴ 360
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0
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3.1k
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Comment: C: how to remove affymetrix control probe sets from a an expression set
13.9 years ago Juliet Hannah ▴ 360
0
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1
reply
1.1k
views
'which' argument to readGappedAlignments
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 360
0
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1
reply
960
views
subsetting transcriptDb
TranscriptDb GenomicFeatures TranscriptDb GenomicFeatures
updated 13.9 years ago by ★ 7.2k • written 13.9 years ago by ▴ 360
0
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0
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1.3k
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diagnosing problems with processing microarray data using lumi package
Microarray probe PROcess convert lumi Microarray probe PROcess convert lumi
14.1 years ago Juliet Hannah ▴ 360
0
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4
replies
1.5k
views
MA plots for large number of arrays
affy affyPLM beadarray lumi affy affyPLM beadarray lumi
updated 14.2 years ago by ▴ 740 • written 14.2 years ago by ▴ 360
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2
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2.7k
views
unable to install lumi package
lumi BiocInstaller lumi BiocInstaller
updated 14.2 years ago by 68k • written 14.2 years ago by ▴ 360
0
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0
replies
1.2k
views
Affy normalization and filtering method
Normalization Leukemia Lung hu6800 affy Normalization Leukemia Lung hu6800 affy
14.8 years ago Juliet Hannah ▴ 360
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