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Uniprot
•
reset
1
vote
5
replies
393
views
UniprotKB AC/ID to Entrez ID Conversion
ID
Uniprot
EntrezID
3 months ago • updated 12 weeks ago
tom.kloter
• 0
3
votes
8
replies
1.9k
views
GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler
AnnotationHub
GO
uniprot
updated 4 months ago by
Guido Hooiveld
★ 3.3k • written 18 months ago by
Alberto
• 0
1
vote
1
reply
308
views
UniProt.ws - Speeding up select() for data retrieval
UniProt.ws
UniProt
updated 21 months ago by
James W. MacDonald
60k • written 21 months ago by
JavierM
• 0
2
votes
3
replies
513
views
Uniprot and UniProt.ws
Uniprot
Annotation
Identifiers
3.3 years ago
Juliet Hannah
▴ 360
4
votes
2
replies
490
views
drawProteins from Uniprot entry (missing chain information)
drawProteins
uniprot
updated 3.6 years ago by
James W. MacDonald
60k • written 3.6 years ago by
mblango
• 0
1
vote
4
replies
571
views
UniProt.ws non-functional or abandoned?
uniprot.ws
uniprot
uniprot accessions
updated 3.8 years ago by
James W. MacDonald
60k • written 3.8 years ago by
balin
• 0
0
votes
2
replies
627
views
Error retrieving data with biomaRt
biomart
r
getbm
uniprot
4.5 years ago
lluex.rova
• 0
0
votes
1
reply
624
views
UniProt.ws - single database for two species
uniprot.ws
uniprot
updated 4.8 years ago by
James W. MacDonald
60k • written 4.8 years ago by
l.nilse
• 0
0
votes
1
reply
939
views
org.Mm.eg.db UNIPROT missing values
Annotation
mouse
UNIPROT
updated 4.9 years ago by
Mike Smith
★ 5.7k • written 4.9 years ago by
julie.chevalier
• 0
1
vote
7
replies
1.1k
views
UniProt.ws report 1:many mappings in a single row
uniprot.ws
UniProt
annotation
5.8 years ago • updated 5.7 years ago
l.nilse
• 0
0
votes
3
replies
682
views
Accessing feature data of a Malus domestica Nimblegen microarray
nimblegen
Biomart
Uniprot
updated 5.7 years ago by
Gordon Smyth
46k • written 5.7 years ago by
theobroma22
▴ 10
4
votes
1
reply
1.1k
views
Converting Protein Accessions Into Protein Symbols
uniprot
uniprot.ws
6.5 years ago
Dario Strbenac
★ 1.5k
2
votes
4
replies
2.3k
views
UniProt.ws version 2.10.2
uniprot.ws
subcellular location
uniprot
6.5 years ago
DHS
• 0
0
votes
3
replies
902
views
Anotations Score of uniprot. ws
uniprot.ws
uniprot
updated 6.7 years ago by
James W. MacDonald
60k • written 6.7 years ago by
cerikahp
• 0
2
votes
2
replies
889
views
Is there a package that has Uniprot protein descriptions?
uniprot.ws
uniprot
uniprot accessions
software error
updated 6.7 years ago by
James W. MacDonald
60k • written 6.7 years ago by
john
▴ 10
2
votes
14
replies
3.0k
views
Unimart not available in 2015?
biomart
uniprot
unimart
6.7 years ago
john
▴ 10
1
vote
4
replies
3.0k
views
problem with retrieving UniProt annotation data
uniprot.ws
uniprot
updated 7.5 years ago by
Marc Carlson
★ 7.2k • written 7.5 years ago by
Guido Hooiveld
★ 3.3k
0
votes
6
replies
1.6k
views
converting UniProt to SGD ids using UniProt.wd
uniprot.ws
uniprot
ensembl
updated 7.6 years ago by
Marc Carlson
★ 7.2k • written 7.6 years ago by
Joseph Barry
▴ 160
0
votes
2
replies
1.0k
views
Missing ensembl_ids in biomaRt uniprot query
biomaRt
uniprot
ensembl
updated 7.7 years ago by
me
• 0 • written 7.7 years ago by
António Miguel de Jesus Domingues
▴ 490
19 results • Page
1 of 1
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Replies
Comment: pathview says my nonmodel species is unknown: "species invalid"
by
James W. MacDonald
60k
Ah, I get it. So what happens if you provide a species code (which can be an actual species code or the genus and species or even a common …
Comment: pathview says my nonmodel species is unknown: "species invalid"
by
nute11a
• 0
Hi James, thanks so much for your response! I actually did: ``` test <- pathview(gene.data=geneList, pathway.id="00440", species="ppyr") ``…
Comment: DESeq2 on normalized data
by
ATpoint
★ 1.4k
It’s not supported. Use limma-trend with the log2-transformed normalized counts if that is all you have. See limma manual.
Comment: pathview says my nonmodel species is unknown: "species invalid"
by
James W. MacDonald
60k
My answer was a bit of a word salad, so perhaps this will illustrate better what I meant. ``` ## create a character object > MyKEGGSpecies…
Answer: pathview says my nonmodel species is unknown: "species invalid"
by
James W. MacDonald
60k
If you have a character object called 'MySpeciesCode' that is just your species code, then you have to pass that object to the function, **…
Votes
A: conceptual question about FDR, FDR adjusted p-value and q-value
A: conceptual question about FDR, FDR adjusted p-value and q-value
A: How to select summit size for histone ChiP-Seq in Diffbind
Answer: Unable to download supplementary files from GSE146963 using GEOquery
Answer: Unable to download supplementary files from GSE146963 using GEOquery
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