Biostar Uniprot

Showing : Uniprot • reset

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393

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ID Uniprot EntrezID

3 months ago • updated 12 weeks ago tom.kloter • 0

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1.9k

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clusterProfiler AnnotationHub GO uniprot

updated 4 months ago by Guido Hooiveld ★ 3.3k • written 18 months ago by Alberto • 0

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308

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UniProt.ws UniProt

updated 21 months ago by James W. MacDonald 60k • written 21 months ago by JavierM • 0

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513

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Uniprot Annotation Identifiers

3.3 years ago Juliet Hannah ▴ 360

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490

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drawProteins uniprot

updated 3.6 years ago by James W. MacDonald 60k • written 3.6 years ago by mblango • 0

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571

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uniprot.ws uniprot uniprot accessions

updated 3.8 years ago by James W. MacDonald 60k • written 3.8 years ago by balin • 0

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627

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biomart r getbm uniprot

4.5 years ago lluex.rova • 0

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624

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uniprot.ws uniprot

updated 4.8 years ago by James W. MacDonald 60k • written 4.8 years ago by l.nilse • 0

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939

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Annotation mouse UNIPROT

updated 4.9 years ago by Mike Smith ★ 5.7k • written 4.9 years ago by julie.chevalier • 0

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1.1k

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uniprot.ws UniProt annotation

5.8 years ago • updated 5.7 years ago l.nilse • 0

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682

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nimblegen Biomart Uniprot

updated 5.7 years ago by Gordon Smyth 46k • written 5.7 years ago by theobroma22 ▴ 10

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1.1k

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uniprot uniprot.ws

6.5 years ago Dario Strbenac ★ 1.5k

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2.3k

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uniprot.ws subcellular location uniprot

6.5 years ago DHS • 0

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902

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uniprot.ws uniprot

updated 6.7 years ago by James W. MacDonald 60k • written 6.7 years ago by cerikahp • 0

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889

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uniprot.ws uniprot uniprot accessions software error

updated 6.7 years ago by James W. MacDonald 60k • written 6.7 years ago by john ▴ 10

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3.0k

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biomart uniprot unimart

6.7 years ago john ▴ 10

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3.0k

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uniprot.ws uniprot

updated 7.5 years ago by Marc Carlson ★ 7.2k • written 7.5 years ago by Guido Hooiveld ★ 3.3k

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1.6k

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uniprot.ws uniprot ensembl

updated 7.6 years ago by Marc Carlson ★ 7.2k • written 7.6 years ago by Joseph Barry ▴ 160

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1.0k

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biomaRt uniprot ensembl

updated 7.7 years ago by me • 0 • written 7.7 years ago by António Miguel de Jesus Domingues ▴ 490

19 results • Page 1 of 1

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Comment: pathview says my nonmodel species is unknown: "species invalid" by James W. MacDonald 60k

Ah, I get it. So what happens if you provide a species code (which can be an actual species code or the genus and species or even a common …

Comment: pathview says my nonmodel species is unknown: "species invalid" by nute11a • 0

Hi James, thanks so much for your response! I actually did: ``` test <- pathview(gene.data=geneList, pathway.id="00440", species="ppyr") ``…

Comment: DESeq2 on normalized data by ATpoint ★ 1.4k

It’s not supported. Use limma-trend with the log2-transformed normalized counts if that is all you have. See limma manual.

Comment: pathview says my nonmodel species is unknown: "species invalid" by James W. MacDonald 60k

My answer was a bit of a word salad, so perhaps this will illustrate better what I meant. ``` ## create a character object > MyKEGGSpecies…

Answer: pathview says my nonmodel species is unknown: "species invalid" by James W. MacDonald 60k

If you have a character object called 'MySpeciesCode' that is just your species code, then you have to pass that object to the function, **…

Votes

A: conceptual question about FDR, FDR adjusted p-value and q-value

A: How to select summit size for histone ChiP-Seq in Diffbind

Answer: Unable to download supplementary files from GSE146963 using GEOquery

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