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Showing :
Uniprot
•
reset
2
votes
5
replies
2.6k
views
UniprotKB AC/ID to Entrez ID Conversion
ID
Uniprot
EntrezID
19 months ago • updated 18 months ago
tom.kloter
• 0
3
votes
9
replies
4.0k
views
GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler
AnnotationHub
GO
uniprot
updated 3 months ago by
Jerina
▴ 10 • written 2.9 years ago by
Alberto
• 0
1
vote
1
reply
727
views
UniProt.ws - Speeding up select() for data retrieval
UniProt.ws
UniProt
updated 3.0 years ago by
James W. MacDonald
64k • written 3.0 years ago by
JavierM
• 0
2
votes
3
replies
898
views
Uniprot and UniProt.ws
Uniprot
Annotation
Identifiers
4.6 years ago
Juliet Hannah
▴ 360
4
votes
2
replies
746
views
drawProteins from Uniprot entry (missing chain information)
drawProteins
uniprot
updated 4.9 years ago by
James W. MacDonald
64k • written 4.9 years ago by
mblango
• 0
1
vote
4
replies
973
views
UniProt.ws non-functional or abandoned?
uniprot.ws
uniprot
uniprot accessions
updated 5.1 years ago by
James W. MacDonald
64k • written 5.1 years ago by
balin
• 0
0
votes
2
replies
956
views
Error retrieving data with biomaRt
biomart
r
getbm
uniprot
5.8 years ago
lluex.rova
• 0
0
votes
1
reply
1.0k
views
UniProt.ws - single database for two species
uniprot.ws
uniprot
updated 6.1 years ago by
James W. MacDonald
64k • written 6.1 years ago by
l.nilse
• 0
0
votes
1
reply
1.4k
views
org.Mm.eg.db UNIPROT missing values
Annotation
mouse
UNIPROT
updated 6.2 years ago by
Mike Smith
★ 6.2k • written 6.2 years ago by
julie.chevalier
• 0
1
vote
7
replies
1.7k
views
UniProt.ws report 1:many mappings in a single row
uniprot.ws
UniProt
annotation
7.1 years ago • updated 7.0 years ago
l.nilse
• 0
0
votes
3
replies
1.0k
views
Accessing feature data of a Malus domestica Nimblegen microarray
nimblegen
Biomart
Uniprot
updated 7.0 years ago by
Gordon Smyth
49k • written 7.0 years ago by
theobroma22
▴ 10
4
votes
1
reply
1.5k
views
Converting Protein Accessions Into Protein Symbols
uniprot
uniprot.ws
7.8 years ago
Dario Strbenac
★ 1.5k
2
votes
4
replies
2.8k
views
UniProt.ws version 2.10.2
uniprot.ws
subcellular location
uniprot
7.8 years ago
DHS
• 0
0
votes
3
replies
1.3k
views
Anotations Score of uniprot. ws
uniprot.ws
uniprot
updated 8.0 years ago by
James W. MacDonald
64k • written 8.0 years ago by
cerikahp
• 0
2
votes
2
replies
1.2k
views
Is there a package that has Uniprot protein descriptions?
uniprot.ws
uniprot
uniprot accessions
software error
updated 8.0 years ago by
James W. MacDonald
64k • written 8.0 years ago by
john
▴ 10
2
votes
14
replies
3.6k
views
Unimart not available in 2015?
biomart
uniprot
unimart
8.0 years ago
john
▴ 10
1
vote
4
replies
3.6k
views
problem with retrieving UniProt annotation data
uniprot.ws
uniprot
updated 8.8 years ago by
Marc Carlson
★ 7.2k • written 8.8 years ago by
Guido Hooiveld
★ 3.8k
0
votes
6
replies
2.1k
views
converting UniProt to SGD ids using UniProt.wd
uniprot.ws
uniprot
ensembl
updated 8.9 years ago by
Marc Carlson
★ 7.2k • written 8.9 years ago by
Joseph Barry
▴ 160
0
votes
2
replies
1.4k
views
Missing ensembl_ids in biomaRt uniprot query
biomaRt
uniprot
ensembl
updated 9.0 years ago by
me
• 0 • written 9.0 years ago by
António Miguel de Jesus Domingues
▴ 490
19 results • Page
1 of 1
Recent ...
Replies
Comment: Can the limma package be applied to Log2 RUV-normalized data?
by
Shaimaa Gamal
• 0
I see. Do you recommend a certain method to get norm.factors through calcNormFactors function espcially if the downstream analysis includes…
Comment: Can the limma package be applied to Log2 RUV-normalized data?
by
Gordon Smyth
49k
515 samples is certainly large enough.
Comment: Correct the batch effect in methylation analysis in R
by
kyj2226
• 0
Thank you for your kind response Gordon! :) Have a good time at the end of the year! Best, Yujin Kim
Comment: Agilent Microarray Gene Oncology analysis gone wrong
by
SamGG
▴ 320
Gordon said to let coef to its default value: topTable(fit, n=20)
Comment: Can the limma package be applied to Log2 RUV-normalized data?
by
Shaimaa Gamal
• 0
Hi Gordon, On what basis we can determine whether the dataset is large or not? I am working on a dataset of 515 samples and 5440 genes. I w…
Votes
Comment: Can the limma package be applied to Log2 RUV-normalized data?
Comment: Can the limma package be applied to Log2 RUV-normalized data?
Answer: Correct the batch effect in methylation analysis in R
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Answer: Correct the batch effect in methylation analysis in R
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Gordon Smyth
49k
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Lluís Revilla Sancho
▴ 720
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Frederik Ziebell
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Sam
▴ 10
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Rory Stark
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