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3
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2
replies
7.0k
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get promoter regions (bed format) of genes hg19
IRanges IRanges
updated 11.8 years ago by ★ 6.8k • written 11.8 years ago by ★ 13k
0
votes
0
replies
539
views
A relevant petition
11.8 years ago Guest User ★ 13k
0
votes
1
reply
1.4k
views
FLowClust/FLowCore
graph flowCore graph flowCore
updated 11.8 years ago by ★ 1.3k • written 11.8 years ago by ★ 13k
0
votes
6
replies
1.4k
views
Problem when trying to use \'affy\' package
Normalization Normalization
updated 11.8 years ago by 68k • written 11.9 years ago by ★ 13k
0
votes
2
replies
3.8k
views
Problem installing BiocGenerics package
BiocGenerics BiocGenerics
updated 11.8 years ago by ★ 8.2k • written 11.8 years ago by ★ 13k
0
votes
2
replies
964
views
conditional merge of duplicated rows in data.frame
updated 11.8 years ago by 25k • written 11.8 years ago by ★ 13k
0
votes
5
replies
1.4k
views
obtaining the counts after batch effect removal
updated 11.9 years ago by 43k • written 11.9 years ago by ★ 13k
0
votes
0
replies
610
views
Problem with PMcorrection and Summarization
Normalization Normalization
11.9 years ago Guest User ★ 13k
0
votes
4
replies
1.7k
views
Cluster stability/robustness
updated 11.9 years ago by ★ 13k • written 11.9 years ago by ★ 13k
0
votes
1
reply
2.0k
views
Querying a HDF5 database from R
rhdf5 rhdf5
updated 11.9 years ago by ▴ 550 • written 11.9 years ago by ★ 13k
0
votes
18
replies
5.9k
views
DEseq2 metagenomic analysis without replicates
DESeq2 DESeq2
updated 11.9 years ago by ▴ 220 • written 11.9 years ago by ★ 13k
0
votes
1
reply
1.4k
views
Inquiries on recommended design formulae for various experiments
DESeq2 DESeq2
updated 11.9 years ago by 43k • written 11.9 years ago by ★ 13k
0
votes
9
replies
2.1k
views
DEXSeq - identical p-values for all exons in a gene
DEXSeq DEXSeq
updated 11.9 years ago by ★ 13k • written 11.9 years ago by ★ 13k
1
vote
4
replies
3.5k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 11.9 years ago by 68k • written 11.9 years ago by ★ 13k
0
votes
1
reply
1.3k
views
GenomicFeatures support for UCSC Microbial Genome Browser
GenomicFeatures GenomicFeatures
updated 11.9 years ago by 16k • written 11.9 years ago by ★ 13k
0
votes
3
replies
2.7k
views
Find enriched GO terms, given a list of GO terms of interest and background GO terms
Annotation GO topGO genomes Annotation GO topGO genomes
11.9 years ago Guest User ★ 13k
0
votes
1
reply
2.7k
views
Answer: A: Find enriched GO terms, given a list of GO terms of interest and background GO t
11.9 years ago Guest User ★ 13k
0
votes
1
reply
1.1k
views
DESeq: multi-factors testing questions
DESeq DESeq
updated 11.9 years ago by 43k • written 11.9 years ago by ★ 13k
0
votes
0
replies
664
views
[job offer phd position]
11.9 years ago Guest User ★ 13k
0
votes
0
replies
4.8k
views
Answer: A: Q-values way smaller than P-values! Is that kosher?
11.9 years ago Guest User ★ 13k
0
votes
1
reply
1.4k
views
EdgeR multi-factor testing question
updated 11.9 years ago by 53k • written 11.9 years ago by ★ 13k
0
votes
2
replies
1.7k
views
Gviz UcscTrack error
updated 11.9 years ago by ★ 1.6k • written 11.9 years ago by ★ 13k
0
votes
1
reply
817
views
Multi-level experiments
limma limma
updated 11.9 years ago by ★ 1.6k • written 11.9 years ago by ★ 13k
0
votes
1
reply
1.0k
views
EdgeR multi-factor testing questions
RNASeq edgeR RNASeq edgeR
updated 11.9 years ago by 53k • written 11.9 years ago by ★ 13k
0
votes
1
reply
792
views
Retrieving Adjusted Individual Channel Intensities
limma limma
updated 11.9 years ago by 68k • written 11.9 years ago by ★ 13k
0
votes
0
replies
984
views
EdgeR multi-fact� or testing questions
11.9 years ago Guest User ★ 13k
0
votes
2
replies
1.3k
views
miRBase
updated 11.9 years ago by ▴ 10 • written 11.9 years ago by ★ 13k
0
votes
3
replies
2.2k
views
Error in dispersionPlot using cummeRbund
GO cummeRbund GO cummeRbund
updated 11.9 years ago by ▴ 140 • written 11.9 years ago by ★ 13k
0
votes
7
replies
1.8k
views
Design/Contrast for Two-Channel Experimental Setup
limma limma
updated 11.9 years ago by 53k • written 11.9 years ago by ★ 13k
0
votes
1
reply
1.2k
views
Inquiry about lumiT function
probe probe
updated 11.9 years ago by ▴ 440 • written 11.9 years ago by ★ 13k
0
votes
1
reply
1.8k
views
Answer: A: Design/Contrast for Two-Channel Experimental Setup
11.9 years ago Guest User ★ 13k
0
votes
5
replies
1.1k
views
Parse sequences so they align properly
updated 11.9 years ago by 16k • written 11.9 years ago by ★ 13k
0
votes
1
reply
833
views
which one should I choose in DEseq
updated 11.9 years ago by ★ 3.8k • written 11.9 years ago by ★ 13k
0
votes
1
reply
617
views
Using EdgeR to test for null ratios other than 1:1
edgeR edgeR
updated 11.9 years ago by 53k • written 11.9 years ago by ★ 13k
0
votes
3
replies
2.7k
views
install qvalue
qvalue qvalue
updated 11.9 years ago by 25k • written 11.9 years ago by ★ 13k
0
votes
0
replies
916
views
which one should I choose in DEGseq
11.9 years ago Guest User ★ 13k
0
votes
1
reply
644
views
Using DESeq to test for null ratios other than 1:1
DESeq DESeq
updated 11.9 years ago by ★ 3.8k • written 11.9 years ago by ★ 13k
0
votes
1
reply
4.3k
views
install tcltk
updated 11.9 years ago by 68k • written 11.9 years ago by ★ 13k
0
votes
0
replies
3.3k
views
Using UniProt.ws to retrieve protein features
UniProt.ws UniProt.ws
11.9 years ago Guest User ★ 13k
0
votes
1
reply
2.7k
views
gage and GO analysis
GO convert gage GO convert gage
updated 11.9 years ago by ▴ 570 • written 11.9 years ago by ★ 13k
0
votes
1
reply
1.3k
views
substr on XStringSet-class
Biostrings Biostrings
updated 11.9 years ago by 16k • written 11.9 years ago by ★ 13k
0
votes
1
reply
447
views
FDR and Estimated Fragment length
updated 11.9 years ago by 68k • written 11.9 years ago by ★ 13k
0
votes
1
reply
1.3k
views
edge R exactTest output looks odd - PLEASE HELP!
edgeR edgeR
updated 11.9 years ago by ▴ 570 • written 11.9 years ago by ★ 13k
0
votes
1
reply
1.9k
views
limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 11.9 years ago by 68k • written 11.9 years ago by ★ 13k
0
votes
2
replies
2.4k
views
differential expression- edgeR
edgeR edgeR
updated 11.9 years ago by ▴ 880 • written 11.9 years ago by ★ 13k
0
votes
1
reply
1.2k
views
forgeSeqFiles
Organism BSgenome BSgenome Organism BSgenome BSgenome
updated 11.9 years ago by 16k • written 11.9 years ago by ★ 13k
0
votes
0
replies
1.5k
views
EdgeR Design matrix not of full rank. The following coefficients not estimable erroR
11.9 years ago Guest User ★ 13k
0
votes
4
replies
7.0k
views
edgeR glmFit
edgeR edgeR
updated 11.9 years ago by ▴ 880 • written 11.9 years ago by ★ 13k
0
votes
1
reply
15k
views
operations are possible only for numeric, logical or complex types
hgu133plus2 pathview hgu133plus2 pathview
updated 11.9 years ago by ★ 1.6k • written 11.9 years ago by ★ 13k
0
votes
1
reply
1.2k
views
Can DESeq2 find tissue-specific expression genes
DESeq2 DESeq2
updated 11.9 years ago by ★ 3.8k • written 11.9 years ago by ★ 13k
1,206 results • Page 8 of 25
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