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0
votes
6
replies
2.1k
views
difficulty loading rsbml
rsbml rsbml
updated 8.1 years ago by • 0 • written 13.3 years ago by ★ 1.1k
0
votes
0
replies
845
views
RCytoscape error with deleteSelectedEdges
RCytoscape RCytoscape
13.1 years ago Paul Shannon ★ 1.1k
0
votes
0
replies
860
views
graph classes: how to combine multiple graphs into a single graph
graph graph
13.2 years ago Paul Shannon ★ 1.1k
0
votes
4
replies
1.4k
views
[R] RCytoscape setPosition error
Network Cancer graph Network Cancer graph
updated 13.3 years ago by ▴ 250 • written 13.3 years ago by ★ 1.1k
0
votes
2
replies
1.6k
views
graph classes: how to combine multiple graphs into a single graph
graph graph
updated 13.3 years ago by ▴ 340 • written 13.3 years ago by ★ 1.1k
0
votes
1
reply
856
views
names of edges in graph classes
updated 13.4 years ago by ▴ 340 • written 13.4 years ago by ★ 1.1k
0
votes
0
replies
718
views
graph::join discards node and edge attributes
graph graph
13.5 years ago Paul Shannon ★ 1.1k
0
votes
2
replies
774
views
obtain a list of possible oncogenes from the annotation packages?
Annotation Annotation
updated 13.5 years ago by ★ 13k • written 13.5 years ago by ★ 1.1k
0
votes
0
replies
1.5k
views
seeking advice on analyzing CGH data
aCGH CGH aCGH aCGH CGH aCGH
13.5 years ago Paul Shannon ★ 1.1k
0
votes
2
replies
746
views
rtracklayer 'track' method, a viewLimits parameter?
rtracklayer IRanges rtracklayer IRanges
updated 13.6 years ago by ★ 11k • written 13.6 years ago by ★ 1.1k
0
votes
4
replies
1.4k
views
rtracklayer 'track' method, a viewLimits parameter?
rtracklayer rtracklayer
updated 13.6 years ago by ★ 11k • written 13.6 years ago by ★ 1.1k
0
votes
5
replies
1.2k
views
intermittent oddity in rtracklayer track names
trigger trigger
updated 13.6 years ago by ★ 11k • written 13.6 years ago by ★ 1.1k
0
votes
3
replies
936
views
rtracklayer -- how to hide some default tracks? fine-grained control of track view mode (pack, full, dense, squish...)
BSgenome BSgenome BSgenome BSgenome
updated 13.6 years ago by ★ 11k • written 13.6 years ago by ★ 1.1k
0
votes
4
replies
954
views
GRangesForUCSCGenome seems to be missing in rtracklayer 1.10, GenomicRanges 1.2
BSgenome BSgenome rtracklayer BSgenome BSgenome rtracklayer
updated 13.6 years ago by 6.7k • written 13.6 years ago by ★ 1.1k
0
votes
0
replies
816
views
grid.chromosome in quantsmooth, without cytobands?
idiogram idiogram
13.6 years ago Paul Shannon ★ 1.1k
0
votes
1
reply
704
views
Biostrings pdf, missing? 'Efficient genome searching with Biostrings and the BSgenome data package'
Preprocessing BSgenome Biostrings BSgenome Preprocessing BSgenome Biostrings BSgenome
updated 13.6 years ago by ★ 8.2k • written 13.6 years ago by ★ 1.1k
0
votes
4
replies
1.2k
views
unmapped keys in hugene10stprobeset.db
Annotation affy Annotation affy
updated 13.8 years ago by ★ 7.2k • written 13.8 years ago by ★ 1.1k
0
votes
8
replies
1.7k
views
CRytoscape: an early release
convert convert
updated 13.8 years ago by ★ 1.9k • written 13.8 years ago by ★ 1.1k
0
votes
2
replies
1.4k
views
proposed: a bridge between R and Cytoscape
Visualization Network graph Visualization Network graph
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ★ 1.1k
0
votes
5
replies
1.1k
views
anybody parsing BioPAX 2?
Pathways Pathways
updated 14.0 years ago by ▴ 10 • written 14.0 years ago by ★ 1.1k
0
votes
8
replies
2.1k
views
'SRAdb useful for visualizing BAM files'
SRAdb SRAdb
updated 14.1 years ago by ▴ 170 • written 14.1 years ago by ★ 1.1k
0
votes
1
reply
931
views
rtracklayer 1.6: invalid class "ucscCart" object
hgu133plus2 rtracklayer hgu133plus2 rtracklayer
updated 14.1 years ago by ★ 11k • written 14.1 years ago by ★ 1.1k
0
votes
6
replies
1.5k
views
load failed for 'Rlibstree'
hgu133plus2 rtracklayer hgu133plus2 rtracklayer
updated 14.1 years ago by ★ 7.4k • written 14.1 years ago by ★ 1.1k
0
votes
4
replies
1.4k
views
fast iterator over DNAString's?
updated 14.2 years ago by ▴ 970 • written 14.2 years ago by ★ 1.1k
0
votes
1
reply
977
views
concurrent R-release & R-devel versions -- bioc also? [was Re: from TF DNA binding motif to downstream genes?]
Transcription GO celegans BSgenome Biostrings BSgenome IRanges Transcription GO celegans
updated 14.3 years ago by 21k • written 14.3 years ago by ★ 1.1k
0
votes
5
replies
1.5k
views
from TF DNA binding motif to downstream genes?
Transcription Biostrings Transcription Biostrings
updated 14.3 years ago by ★ 1.6k • written 14.3 years ago by ★ 1.1k
0
votes
2
replies
1.6k
views
KEGGgraph: any way to obtain 'outcome' nodes?
Pathways KEGGgraph Pathways KEGGgraph
updated 14.4 years ago by ▴ 270 • written 14.4 years ago by ★ 1.1k
0
votes
2
replies
1.1k
views
data (golub) in the CMA vignette (version 1.4.0)
CMA CMA
updated 14.5 years ago by 6.7k • written 14.5 years ago by ★ 1.1k
0
votes
1
reply
838
views
no 'strands' method on GenomicData in 2.5?
hgu133plus2 rtracklayer IRanges hgu133plus2 rtracklayer IRanges
updated 14.8 years ago by ▴ 620 • written 14.8 years ago by ★ 1.1k
0
votes
2
replies
955
views
rtracklayer no longer uses TrackSet?
rtracklayer rtracklayer
updated 14.9 years ago by ▴ 620 • written 14.9 years ago by ★ 1.1k
0
votes
0
replies
620
views
build a chromLocation object for SNP locations, not genes
SNP hu6800 SNP hu6800
14.9 years ago Paul Shannon ★ 1.1k
0
votes
1
reply
617
views
IRanges problem: ranges (overlap (range.1, range.2)) does not seem to work
updated 14.9 years ago by ▴ 620 • written 15.0 years ago by ★ 1.1k
0
votes
0
replies
722
views
IRanges problem: ranges (overlap (range.1, range.2)) does not seem to work
IRanges IRanges
15.0 years ago Paul Shannon ★ 1.1k
0
votes
0
replies
1.1k
views
query BiomaRt for the coordinates of the coding regions within individual exons?
biomaRt biomaRt
15.0 years ago Paul Shannon ★ 1.1k
0
votes
4
replies
1.5k
views
KEGGGraph: some complexed proteins are orphans in graphNEL
KEGGgraph KEGGgraph
updated 15.1 years ago by ▴ 340 • written 15.1 years ago by ★ 1.1k
0
votes
4
replies
1.1k
views
Rredland installation difficulties
Pathways graph Rredland Pathways graph Rredland
updated 15.1 years ago by ★ 1.6k • written 15.1 years ago by ★ 1.1k
0
votes
2
replies
680
views
assemble DNAString complete coding sequence from exons?
updated 15.2 years ago by 16k • written 15.2 years ago by ★ 1.1k
0
votes
1
reply
592
views
duplicate entries in org.Hs.egCHRLOC?
updated 15.2 years ago by 21k • written 15.2 years ago by ★ 1.1k
0
votes
3
replies
1.0k
views
other human genomes, other SNP sets?
Sequencing BSgenome SNPlocs BSgenome Sequencing BSgenome SNPlocs BSgenome
15.2 years ago Paul Shannon ★ 1.1k
0
votes
4
replies
2.5k
views
how to modify a Biostrings object
SNPlocs SNPlocs
updated 15.3 years ago by 16k • written 15.3 years ago by ★ 1.1k
0
votes
0
replies
702
views
rtracklayer/argo error: Error in .jcall("calhoun/gebo/ui/DesktopFrame"
15.3 years ago Paul Shannon ★ 1.1k
0
votes
2
replies
814
views
BSgenome, GenomeSearching.: "Injecting known SNPs in the chromosome sequences"
updated 15.3 years ago by 16k • written 15.3 years ago by ★ 1.1k
0
votes
0
replies
915
views
rtracklayer bug? cannot coerce type 'externalptr' to vector of type 'double' in browseGenome call
hgu133plus2 rtracklayer hgu133plus2 rtracklayer
15.3 years ago Paul Shannon ★ 1.1k
0
votes
2
replies
647
views
comparing multiple individual genomes in bioc?
genomes genomes
updated 15.3 years ago by ★ 6.5k • written 15.3 years ago by ★ 1.1k
0
votes
0
replies
1.7k
views
rtracklayer bug? cannot coerce type 'externalptr' to vector of type 'double' in browseGenome call
hgu133plus2 rtracklayer hgu133plus2 rtracklayer
15.3 years ago Paul Shannon ★ 1.1k
0
votes
1
reply
1.9k
views
molecular viz tools (eg, PyMol) and R?
chimera chimera
updated 15.8 years ago by ★ 1.7k • written 15.8 years ago by ★ 1.1k
0
votes
1
reply
896
views
updateGraph & deprecated edgemode slot
graph graph
updated 15.9 years ago by ▴ 570 • written 15.9 years ago by ★ 1.1k
0
votes
1
reply
660
views
GraphAT help?
Yeast GraphAT Yeast GraphAT
updated 16.0 years ago by 6.7k • written 16.0 years ago by ★ 1.1k
0
votes
3
replies
981
views
dumb question: using Biostrings (or something else) to translate DNA bases to amino acid codes
Biostrings Biostrings
updated 16.3 years ago by ▴ 280 • written 16.3 years ago by ★ 1.1k
0
votes
10
replies
1.6k
views
how to build a GOstats-compatible annotation package for plasmodium falciparum?
Annotation Yeast GOstats Annotation Yeast GOstats
updated 16.5 years ago by ▴ 30 • written 16.5 years ago by ★ 1.1k
64 results • Page 1 of 2
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