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0
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2.7k
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Comment: Comment: threeUTRsByTranscript per GENE
4.6 years ago Dario Strbenac ★ 1.6k
2
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1
reply
5.0k
views
Convert UniProt Entry Names into Gene Symbols
Proteomics ProteomicsWorkflow UniProt.ws
updated 4.7 years ago by 68k • written 4.7 years ago by ★ 1.6k
4
votes
1
reply
1.9k
views
Changing Row Names of MultiAssayExperiment Assay
MultiAssayExperiment
updated 4.9 years ago by ▴ 100 • written 4.9 years ago by ★ 1.6k
0
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0
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3.1k
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Comment: Comment: What lengths are used to calculate TPM in "scater" package
5.0 years ago Dario Strbenac ★ 1.6k
0
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0
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2.0k
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Comment: C: Obtaining Comments From VCF Header
5.2 years ago Dario Strbenac ★ 1.6k
0
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0
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922
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Expected Output for Promoters Used for GRangesList
GenomicRanges
5.2 years ago Dario Strbenac ★ 1.6k
2
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4
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2.0k
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Obtaining Comments From VCF Header
VariantAnnotation VCFHeader
written 5.3 years ago by ★ 1.6k
0
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0
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1.9k
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Comment: C: Import or Subset VCF PASS Variants
5.5 years ago Dario Strbenac ★ 1.6k
3
votes
2
replies
1.9k
views
Import or Subset VCF PASS Variants
VariantAnnotation subset ScanVcfParam
updated 5.5 years ago by 25k • written 5.5 years ago by ★ 1.6k
0
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0
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2.8k
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Comment: C: normalization methods for scRNA-seq and RNA-seq in specific cases of increased g
5.7 years ago Dario Strbenac ★ 1.6k
0
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1
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2.8k
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Comment: C: normalization methods for scRNA-seq and RNA-seq in specific cases of increased g
5.7 years ago Dario Strbenac ★ 1.6k
0
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0
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2.8k
views
Comment: C: normalization methods for scRNA-seq and RNA-seq in specific cases of increased g
5.7 years ago Dario Strbenac ★ 1.6k
0
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2
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2.8k
views
Comment: C: normalization methods for scRNA-seq and RNA-seq in specific cases of increased g
5.7 years ago Dario Strbenac ★ 1.6k
2
votes
2
replies
975
views
Recommended Read Support Filter for Breakends
StructuralVariantAnnotation
updated 6.0 years ago by ▴ 40 • written 6.0 years ago by ★ 1.6k
1
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1
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5.3k
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Answer: A: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
6.0 years ago Dario Strbenac ★ 1.6k
0
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1
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1.4k
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Comment: C: Accounting for Gene Set Overlaps in Goana and Kegga Results
6.1 years ago Dario Strbenac ★ 1.6k
2
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3
replies
1.4k
views
Accounting for Gene Set Overlaps in Goana and Kegga Results
limma pathway
updated 6.1 years ago by ▴ 280 • written 6.1 years ago by ★ 1.6k
5
votes
11
replies
5.4k
views
Matching TCGA Aliquot ID to UUID or Barcode
TCGAutils TCGAbiolinks GenomicDataCommons
updated 6.2 years ago by 700 • written 6.2 years ago by ★ 1.6k
1
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4
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5.4k
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Comment: C: Matching TCGA Aliquot ID to UUID or Barcode
6.2 years ago Dario Strbenac ★ 1.6k
0
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0
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1.4k
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Comment: C: rbind VCF Two Objects Column Names Error
6.3 years ago Dario Strbenac ★ 1.6k
2
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1
reply
1.6k
views
Answer: A: How can I overcome the error of "No residual degrees of freedom in linear model
6.3 years ago Dario Strbenac ★ 1.6k
0
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3
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1.4k
views
rbind VCF Two Objects Column Names Error
VariantAnnotation VCF
6.3 years ago Dario Strbenac ★ 1.6k
0
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1
reply
1.7k
views
Comment: C: Mimic Counting of HTSeq-count Using countOverlaps
6.4 years ago Dario Strbenac ★ 1.6k
4
votes
4
replies
1.7k
views
Mimic Counting of HTSeq-count Using countOverlaps
GenomicAlignments countOverlaps
updated 6.4 years ago by 25k • written 6.4 years ago by ★ 1.6k
0
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1
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1.5k
views
Comment: C: RNA-seq Statstical Models and Transcriptional Amplification
6.5 years ago Dario Strbenac ★ 1.6k
3
votes
4
replies
1.5k
views
RNA-seq Statstical Models and Transcriptional Amplification
edgeR DESeq2 Transcriptional Amplification
updated 6.5 years ago by ★ 29k • written 6.5 years ago by ★ 1.6k
0
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1
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1.8k
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Comment: C: Paired analysis (tumor vs normal) at three different conditions with EdgeR
6.6 years ago Dario Strbenac ★ 1.6k
0
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1
reply
1.5k
views
Comment: C: qQCReport Missing Plots Described in Documentation
6.6 years ago Dario Strbenac ★ 1.6k
1
vote
4
replies
1.5k
views
qQCReport Missing Plots Described in Documentation
QuasR
updated 6.6 years ago by ▴ 400 • written 6.6 years ago by ★ 1.6k
2
votes
0
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3.0k
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Answer: A: Difference in TCGA RNAseq expression values between GDC harmonized and legacy da
6.9 years ago Dario Strbenac ★ 1.6k
0
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0
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729
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Comment: C: How to monitor the performance of MS-based omics data?
6.9 years ago Dario Strbenac ★ 1.6k
6
votes
4
replies
10k
views
Converting UniProt Identifier Into Representative Gene Symbol
UniProt.ws
updated 2.8 years ago by 700 • written 7.1 years ago by ★ 1.6k
2
votes
1
reply
1.5k
views
Answer: A: Looking for code showing how estimateDispersions works.
7.1 years ago Dario Strbenac ★ 1.6k
1
vote
1
reply
1.4k
views
Mean-Variance Plot for Normalised Counts
EDASeq meanVarPlot
updated 7.3 years ago by ▴ 980 • written 7.3 years ago by ★ 1.6k
0
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1
reply
1.1k
views
meanVarPlot Ignores Sample Total Count Differences
EDASeq meanVarPlot
7.3 years ago Dario Strbenac ★ 1.6k
0
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0
replies
1.6k
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Comment: C: Non-Redundant Edges in Connected Components
7.3 years ago Dario Strbenac ★ 1.6k
0
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0
replies
1.6k
views
Comment: C: Non-Redundant Edges in Connected Components
7.3 years ago Dario Strbenac ★ 1.6k
1
vote
4
replies
1.6k
views
Non-Redundant Edges in Connected Components
RBGL
updated 7.4 years ago by 16k • written 7.4 years ago by ★ 1.6k
1
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0
replies
1.9k
views
Answer: A: Cannot install AUCell 1.2.2
7.4 years ago Dario Strbenac ★ 1.6k
1
vote
1
reply
1.2k
views
Recommendations for Protein Network Data Structure
AnnotationDbi Bimap Interactome
7.4 years ago Dario Strbenac ★ 1.6k
0
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0
replies
4.4k
views
Comment: C: featureCounts taking 4-10 hours per BAM file?
7.5 years ago Dario Strbenac ★ 1.6k
0
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0
replies
2.6k
views
Comment: C: How to handle multi-TSS genes in Repitools?
7.6 years ago Dario Strbenac ★ 1.6k
0
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1
reply
2.6k
views
Comment: C: How to handle multi-TSS genes in Repitools?
7.6 years ago Dario Strbenac ★ 1.6k
0
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0
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1.3k
views
Answer: A: Splicing analysis with ASpli
7.6 years ago Dario Strbenac ★ 1.6k
0
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0
replies
2.3k
views
Comment: C: No BAM option in readAligned from the ShortRead package
7.6 years ago Dario Strbenac ★ 1.6k
2
votes
1
reply
2.3k
views
Answer: A: No BAM option in readAligned from the ShortRead package
7.6 years ago Dario Strbenac ★ 1.6k
0
votes
1
reply
1.8k
views
Comment: C: Normalise counts when tumour samples have normal tissue contamination.
7.6 years ago Dario Strbenac ★ 1.6k
0
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1
reply
1.4k
views
Answer: A: RUVnormalize- How to output a corrected expression matrix without negative value
7.7 years ago Dario Strbenac ★ 1.6k
0
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0
replies
2.0k
views
Comment: C: Changing SVM-Kernal in geNetClassifier function
7.9 years ago Dario Strbenac ★ 1.6k
0
votes
1
reply
2.0k
views
Answer: A: Changing SVM-Kernal in geNetClassifier function
7.9 years ago Dario Strbenac ★ 1.6k
284 results • Page 2 of 6
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