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Showing :
questions
0
votes
3
replies
1.3k
views
Align a list of DNA sequence, extract only positions with SNPs for conpact view?
msa
Biostrings
updated 4.0 years ago by
UBod
▴ 290 • written 4.0 years ago by
Vang Le
▴ 80
2
votes
4
replies
1.1k
views
Homo.sapiens package: Some genes are not found
homo.sapiens
5.7 years ago
Vang Le
▴ 80
1
vote
2
replies
1.5k
views
AnnotationHub, force update snapshot date?
annotationhub
updated 5.8 years ago by
shepherl
3.9k • written 5.8 years ago by
Vang Le
▴ 80
0
votes
3
replies
708
views
'downstream' disappeared from GenomicRanges package?
genomicranges
5.8 years ago
Vang Le
▴ 80
0
votes
1
reply
814
views
count coverage for exact matches to sequence pattern
genomicfeatures
rsamtools
updated 7.3 years ago by
Michael Lawrence
★ 11k • written 7.3 years ago by
Vang Le
▴ 80
2
votes
1
reply
4.0k
views
extract chromosomes and read-starts from a BAM file to a data.frame?
bam
rsamtools
samtools
genomicalignments
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
Vang Le
▴ 80
0
votes
2
replies
2.8k
views
rtracklayer /GRange object to BED format?
granges
rtracklayer
updated 8.2 years ago by
Michael Lawrence
★ 11k • written 8.2 years ago by
Vang Le
▴ 80
0
votes
0
replies
1.3k
views
count overlapping reads for CpG islands and annotate with gene names?
annotation
chippeakanno
rattus norvegicus
medip-seq
8.2 years ago
Vang Le
▴ 80
0
votes
2
replies
1.2k
views
edgeR, very big lib.size makes CPM very small
updated 9.7 years ago by
Gordon Smyth
50k • written 9.7 years ago by
Vang Le
▴ 80
0
votes
1
reply
1.9k
views
edgeR: Analyze mini-time-series MeDIP data of pooled DNAs without replicates?
Sequencing
edgeR
MEDIPS
Sequencing
edgeR
MEDIPS
9.8 years ago
Vang Le
▴ 80
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