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Comment: C: Align a list of DNA sequence, extract only positions with SNPs for conpact view?
5.5 years ago Vang Le ▴ 80
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3
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1.9k
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Align a list of DNA sequence, extract only positions with SNPs for conpact view?
msa Biostrings
updated 5.5 years ago by ▴ 300 • written 5.5 years ago by ▴ 80
2
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4
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1.5k
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Homo.sapiens package: Some genes are not found
homo.sapiens
7.3 years ago • updated 7.2 years ago Vang Le ▴ 80
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Comment: C: Homo.sapiens package: Some genes are not found
7.2 years ago Vang Le ▴ 80
0
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1
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1.5k
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Comment: C: Homo.sapiens package: Some genes are not found
7.3 years ago Vang Le ▴ 80
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0
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2.0k
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Comment: C: AnnotationHub, force update snapshot date?
7.3 years ago Vang Le ▴ 80
1
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2
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2.0k
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AnnotationHub, force update snapshot date?
annotationhub
updated 7.3 years ago by 4.2k • written 7.3 years ago by ▴ 80
0
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1
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1.0k
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Comment: C: 'downstream' disappeared from GenomicRanges package?
7.3 years ago Vang Le ▴ 80
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3
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1.0k
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'downstream' disappeared from GenomicRanges package?
genomicranges
7.3 years ago Vang Le ▴ 80
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0
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1.5k
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Job: Bioinformatician in Aalborg University Hospital, Denmark
bioinformatician job job Job
8.6 years ago Vang Le ▴ 80
0
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1
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1.2k
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count coverage for exact matches to sequence pattern
genomicfeatures rsamtools
updated 8.8 years ago by ★ 11k • written 8.8 years ago by ▴ 80
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1
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11k
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Comment: C: resize (shrink/expand) GenomicRanges
8.9 years ago Vang Le ▴ 80
2
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1
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5.2k
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extract chromosomes and read-starts from a BAM file to a data.frame?
bam rsamtools samtools genomicalignments
updated 9.5 years ago by 25k • written 9.5 years ago by ▴ 80
0
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2
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3.4k
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rtracklayer /GRange object to BED format?
granges rtracklayer
updated 9.7 years ago by ★ 11k • written 9.7 years ago by ▴ 80
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3.4k
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Answer: A: rtracklayer /GRange object to BED format?
9.7 years ago Vang Le ▴ 80
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0
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1.7k
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count overlapping reads for CpG islands and annotate with gene names?
annotation chippeakanno rattus norvegicus medip-seq
9.7 years ago Vang Le ▴ 80
0
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0
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1.5k
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Comment: C: edgeR, very big lib.size makes CPM very small
11.2 years ago Vang Le ▴ 80
0
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2
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1.5k
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edgeR, very big lib.size makes CPM very small
updated 11.2 years ago by 53k • written 11.2 years ago by ▴ 80
0
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0
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308
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Comment: C: edgeR: Analyze mini-time-series MeDIP data of pooled DNAs without replicates
11.2 years ago Vang Le ▴ 80
0
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1
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308
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Comment: C: edgeR: Analyze mini-time-series MeDIP data of pooled DNAs without replicates
11.2 years ago Vang Le ▴ 80
0
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1
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308
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Answer: A: edgeR: Analyze mini-time-series MeDIP data of pooled DNAs without replicates
11.2 years ago Vang Le ▴ 80
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11k
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Answer: A: deseq2: convert ensembl ID to gene symbol.
11.3 years ago Vang Le ▴ 80
0
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1
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2.3k
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edgeR: Analyze mini-time-series MeDIP data of pooled DNAs without replicates?
Sequencing edgeR MEDIPS Sequencing edgeR MEDIPS
11.3 years ago Vang Le ▴ 80
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