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0
votes
4
replies
764
views
Limma classical interaction model question
limma
updated 4.9 years ago by 50k • written 4.9 years ago by ▴ 420
0
votes
1
reply
593
views
Highly uneven mapping rates and counts between samples
limma normalization deseq2
updated 5.2 years ago by ★ 28k • written 5.2 years ago by ▴ 420
1
vote
1
reply
584
views
ANOVA in ROAST
limma
updated 5.9 years ago by 50k • written 5.9 years ago by ▴ 420
2
votes
2
replies
815
views
Update from developers branch of bioconductor packages
bioconductor
updated 6.1 years ago by ★ 6.5k • written 6.1 years ago by ▴ 420
0
votes
0
replies
606
views
CAMERA fold changes per gene set?
limma
6.3 years ago chris86 ▴ 420
4
votes
2
replies
962
views
Paired factorial design model in limma
limma
updated 6.4 years ago by ★ 28k • written 6.4 years ago by ▴ 420
0
votes
0
replies
850
views
Tximport with paired and single ended reads
limma rna-seq bioconductor
6.7 years ago • updated 6.6 years ago chris86 ▴ 420
22
votes
8
replies
4.1k
views
Limma camera function never gives any differentially expressed gene sets
limma
updated 6.7 years ago by • 0 • written 8.8 years ago by ▴ 420
1
vote
1
reply
898
views
Paired t-test with 2 groups, how to I tell the DEGs between them?
limma
updated 6.8 years ago by 65k • written 6.8 years ago by ▴ 420
3
votes
2
replies
903
views
Batch effect between paired and single ended reads
rnaseq
updated 6.8 years ago by 50k • written 6.8 years ago by ▴ 420
2
votes
1
reply
604
views
How does it work with submitting a package to the bioconductor and doing the paper together?
bioconductor
updated 7.0 years ago by 25k • written 7.0 years ago by ▴ 420
2
votes
2
replies
755
views
Calculating probability of getting xx genes past FDR10%
limma
updated 7.1 years ago by 50k • written 7.1 years ago by ▴ 420
0
votes
0
replies
636
views
Removal of variation in dataset associated with a continuous variable
limma microarray
7.5 years ago chris86 ▴ 420
3
votes
3
replies
802
views
background correction for illumina array files
limma microarray
updated 7.6 years ago by 50k • written 7.6 years ago by ▴ 420
2
votes
2
replies
1.3k
views
analysing continuous variable with limma and correcting for covariates
limma microarray
updated 7.8 years ago by 65k • written 7.8 years ago by ▴ 420
2
votes
1
reply
550
views
illuminaHumanv4.db versus illuminaHumanv2.db beadchip annotation differences
limma microarray
updated 7.8 years ago by 65k • written 7.8 years ago by ▴ 420
4
votes
1
reply
616
views
How to fit a regression for a time series array experiment with limma?
limma microarray
updated 7.9 years ago by 65k • written 7.9 years ago by ▴ 420
1
vote
2
replies
653
views
Best approach to analyse this time series experiment
microarray
updated 7.9 years ago by 50k • written 7.9 years ago by ▴ 420
2
votes
1
reply
849
views
Meta analysis of healthy and diseased data using illumina microarrays
normalization
updated 7.9 years ago by ▴ 150 • written 7.9 years ago by ▴ 420
0
votes
2
replies
985
views
Why are these two clustering patterns different?
bioconductor
updated 7.9 years ago by ▴ 510 • written 7.9 years ago by ▴ 420
3
votes
10
replies
1.7k
views
Combining data from multiple illumina microarray experiments
normalization limma
updated 8.0 years ago by 50k • written 8.0 years ago by ▴ 420
5
votes
5
replies
2.5k
views
Is this the correct way of doing a paired t-test in limma using contrasts
limma
8.0 years ago chris86 ▴ 420
3
votes
2
replies
769
views
How to do contrasts in CAMERA/ROMER/ROAST/etc in Limma?
limma
updated 8.0 years ago by ★ 28k • written 8.0 years ago by ▴ 420
5
votes
5
replies
736
views
Using p.nominal DE genes from limma
limma
updated 8.1 years ago by ▴ 360 • written 8.1 years ago by ▴ 420
0
votes
2
replies
1.0k
views
R version 3.3.0 beta crashing, how do I roll back?
software error
updated 8.1 years ago by 25k • written 8.1 years ago by ▴ 420
8
votes
5
replies
2.8k
views
Limma un moderated t-test
limma microarray
updated 8.1 years ago by ★ 1.0k • written 8.1 years ago by ▴ 420
1
vote
8
replies
1.0k
views
The same statistical test for all multi omic features
limma microarray rnaseq deseq2
8.2 years ago chris86 ▴ 420
3
votes
1
reply
3.2k
views
Calculating a p value by permutation analysis
microarray
updated 8.2 years ago by 50k • written 8.2 years ago by ▴ 420
4
votes
2
replies
1.4k
views
Integrated genomic analysis - mRNA, proteomics, flow, miRNA-seq
microarray
updated 8.3 years ago by ★ 1.1k • written 8.3 years ago by ▴ 420
3
votes
1
reply
917
views
Finding DE genes across any condition with Limma
limma
updated 8.7 years ago by ★ 28k • written 8.7 years ago by ▴ 420
0
votes
1
reply
3.0k
views
Prior plots from COMBAT
limma normalization microarray
updated 8.7 years ago by ▴ 850 • written 8.7 years ago by ▴ 420
6
votes
3
replies
1.4k
views
Help with limma contrast matrix
limma
updated 8.7 years ago by ★ 28k • written 8.7 years ago by ▴ 420
1
vote
1
reply
2.2k
views
Perplexing results with Limma with RNA-seq data
sequencing microarray
updated 8.7 years ago by ★ 13k • written 8.7 years ago by ▴ 420
3
votes
1
reply
2.3k
views
Adjusting for gender using limma
limma microarray sequencing
updated 8.8 years ago by 65k • written 8.8 years ago by ▴ 420
4
votes
3
replies
1.5k
views
Non specific filtering prior to differential expression with limma based on variance
limma microarray normalization
updated 8.8 years ago by 50k • written 8.8 years ago by ▴ 420
3
votes
4
replies
3.4k
views
Variance filtering prior to RNA-seq differential expression
sequencing deseq limma
updated 8.8 years ago by 50k • written 8.8 years ago by ▴ 420
36 results • Page 1 of 1
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