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Answer: A: monocle: Error in if (cds@expressionFamily@vfamily %in% c("negbinomial", "negbin
6.1 years ago Mehmet Ilyas Cosacak • 0
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monocle: Error in if (cds@expressionFamily@vfamily %in% c("negbinomial", "negbinomial.size"))
monocle
6.2 years ago • updated 6.1 years ago Mehmet Ilyas Cosacak • 0
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Comment: C: different statiscal results in DESeq2 from the same samples
6.5 years ago Mehmet Ilyas Cosacak • 0
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1
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937
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Comment: C: different statiscal results in DESeq2 from the same samples
6.5 years ago Mehmet Ilyas Cosacak • 0
0
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1
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937
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Comment: C: different statiscal results in DESeq2 from the same samples
6.5 years ago Mehmet Ilyas Cosacak • 0
2
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6
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937
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different statiscal results in DESeq2 from the same samples
deseq2
updated 6.5 years ago by 41k • written 6.5 years ago by • 0
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Comment: C: library size and fold changes
7.5 years ago Mehmet Ilyas Cosacak • 0
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1.4k
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refGenome: Error in `row.names<-.data.frame`(`*tmp*`, value = value) : duplicate 'row.names' are not allowed
refGenome geneList
7.7 years ago Mehmet Ilyas Cosacak • 0
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Comment: C: Plotting only intergenic reads on chromosomes?
7.7 years ago Mehmet Ilyas Cosacak • 0
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Plotting only intergenic reads on chromosomes?
gviz GenomeGraphs BAM rsamtools samtools
updated 7.7 years ago by 25k • written 7.7 years ago by • 0
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Comment: C: limma & design matrix: for 2-color dyes and 4-comparisons?
7.8 years ago Mehmet Ilyas Cosacak • 0
6
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5
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limma & design matrix: for 2-color dyes and 4-comparisons?
limma microarray limma design matrix
updated 7.8 years ago by 50k • written 7.8 years ago by • 0
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Comment: C: limma & design matrix: for 2-color dyes and 4-comparisons?
7.8 years ago Mehmet Ilyas Cosacak • 0
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2.1k
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Comment: C: microarray data analsis with limma?
7.9 years ago Mehmet Ilyas Cosacak • 0
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1
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2.1k
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Comment: C: microarray data analsis with limma?
7.9 years ago Mehmet Ilyas Cosacak • 0
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2.1k
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Comment: A: microarray data analsis with limma?
7.9 years ago Mehmet Ilyas Cosacak • 0
6
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11
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2.1k
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microarray data analsis with limma?
limma genepix microarray agilent microarrays
7.9 years ago Mehmet Ilyas Cosacak • 0
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2.1k
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Comment: C: microarray data analsis with limma?
7.9 years ago Mehmet Ilyas Cosacak • 0
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1
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2.1k
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Comment: C: microarray data analsis with limma?
7.9 years ago Mehmet Ilyas Cosacak • 0
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1
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1.3k
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Comment: C: Can we use Entrez IDs for GOSeq?
7.9 years ago Mehmet Ilyas Cosacak • 0
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1.3k
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Can we use Entrez IDs for GOSeq?
goseq entrez gene identifiers
updated 7.9 years ago by 65k • written 7.9 years ago by • 0
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980
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Comment: C: toTable(org.Dr.egGO) into a data.frame with unique gene_id and all ensembl_ids i
8.1 years ago Mehmet Ilyas Cosacak • 0
2
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2
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980
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toTable(org.Dr.egGO) into a data.frame with unique gene_id and all ensembl_ids in one column
org.Dr.egGO org.Dr.eg.db ToTable
updated 8.1 years ago by 65k • written 8.1 years ago by • 0
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Comment: C: danRer10 is missing in geneLenDataBase
8.1 years ago Mehmet Ilyas Cosacak • 0
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1
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1.7k
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Comment: C: danRer10 is missing in geneLenDataBase
8.1 years ago Mehmet Ilyas Cosacak • 0
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4
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1.7k
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danRer10 is missing in geneLenDataBase
genelendatabase goseq
updated 8.1 years ago by ▴ 310 • written 8.2 years ago by • 0
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2.1k
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Comment: C: Error in exp(alleffects) : non-numeric argument to mathematical function
8.4 years ago Mehmet Ilyas Cosacak • 0
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1
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2.1k
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Comment: C: Error in exp(alleffects) : non-numeric argument to mathematical function
8.4 years ago Mehmet Ilyas Cosacak • 0
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4
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2.1k
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Error in exp(alleffects) : non-numeric argument to mathematical function
dexseq estimateExonFoldChanges
updated 8.4 years ago by ★ 1.9k • written 8.4 years ago by • 0
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Comment: C: Create Db for exon starts/ends using rtracklayer
8.5 years ago Mehmet Ilyas Cosacak • 0
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2
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1.2k
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Create Db for exon starts/ends using rtracklayer
rtracklayer gtf
8.5 years ago Mehmet Ilyas Cosacak • 0
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2.0k
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Comment: C: estimateSizeFactors first or later?
8.5 years ago Mehmet Ilyas Cosacak • 0
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3
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2.0k
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estimateSizeFactors first or later?
estimatesizefactors deseq2
updated 8.5 years ago by 41k • written 8.5 years ago by • 0
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