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3
votes
4
replies
3.2k
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How to normalize chromatin and RNA-Seq data together ?
atac-seq atac deseq2 sva combat
updated 7.8 years ago by 43k • written 7.9 years ago by ▴ 10
0
votes
0
replies
964
views
Comment: C: dexseq_count.py in shell script
8.2 years ago g.atla ▴ 10
0
votes
1
reply
1.7k
views
How to manage multiple legends in heatmap_legend_param (ComplexHeatmap) ?
ComplexHeatmap complexheatmap
8.3 years ago g.atla ▴ 10
0
votes
0
replies
1.7k
views
Answer: A: How to manage multiple legends in heatmap_legend_param (ComplexHeatmap) ?
8.3 years ago g.atla ▴ 10
2
votes
1
reply
1.5k
views
WGCNA - soft threshold
wgcna
updated 8.3 years ago by ★ 3.0k • written 8.3 years ago by ▴ 10
0
votes
1
reply
1.4k
views
Comment: C: Incorporate "batch" information for paired-design ?
8.3 years ago g.atla ▴ 10
0
votes
3
replies
1.4k
views
Incorporate "batch" information for paired-design ?
RNA-Seq deseq2 batch effect
8.3 years ago g.atla ▴ 10
0
votes
1
reply
2.0k
views
Comment: C: Paired design, normalisation and batch effects.
8.4 years ago g.atla ▴ 10
1
vote
5
replies
2.0k
views
Paired design, normalisation and batch effects.
deseq2 eda sva rna-seq
updated 8.4 years ago by ▴ 610 • written 8.4 years ago by ▴ 10
0
votes
0
replies
2.0k
views
Comment: C: Paired design, normalisation and batch effects.
8.4 years ago g.atla ▴ 10
4
votes
1
reply
4.1k
views
PCA plot on DE genes do not separate samples. DESeq2.
deseq2 pca
updated 8.7 years ago by 67k • written 8.7 years ago by ▴ 10
0
votes
3
replies
1.7k
views
Calculating a score from fold change matrix of pair-wise rna-seq data
rna-seq deseq2 differential gene expression biostatistics
8.8 years ago g.atla ▴ 10
0
votes
1
reply
1.7k
views
Comment: C: Calculating a score from fold change matrix of pair-wise rna-seq data
8.8 years ago g.atla ▴ 10
0
votes
0
replies
4.0k
views
Comment: C: Approaches to group the RNA-Seq samples with large heterogeneity
8.8 years ago g.atla ▴ 10
2
votes
1
reply
3.1k
views
Fold Change and statistical significance
deseq2 logfoldchange
updated 8.8 years ago by 43k • written 8.8 years ago by ▴ 10
0
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1
reply
4.0k
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Comment: C: Approaches to group the RNA-Seq samples with large heterogeneity
8.8 years ago g.atla ▴ 10
0
votes
1
reply
4.0k
views
Comment: C: Approaches to group the RNA-Seq samples with large heterogeneity
8.8 years ago g.atla ▴ 10
2
votes
16
replies
4.0k
views
Approaches to group the RNA-Seq samples with large heterogeneity
clustering pca deseq2 edger logfoldchange
updated 8.8 years ago by 43k • written 8.8 years ago by ▴ 10
0
votes
0
replies
2.9k
views
Comment: C: Removing unwanted variation (RUV) for paired analysis ?
8.8 years ago g.atla ▴ 10
0
votes
0
replies
2.9k
views
Comment: C: Removing unwanted variation (RUV) for paired analysis ?
8.8 years ago g.atla ▴ 10
1
vote
0
replies
11k
views
Comment: C: How do I extract read counts from DESeq2
8.8 years ago g.atla ▴ 10
4
votes
5
replies
2.9k
views
Removing unwanted variation (RUV) for paired analysis ?
ruvseq edger ruvg removebatcheffect
updated 8.9 years ago by ★ 28k • written 8.9 years ago by ▴ 10
0
votes
1
reply
9.3k
views
Comment: C: DESeq2 PCA plot: paired analysis
8.9 years ago g.atla ▴ 10
0
votes
0
replies
9.3k
views
Comment: C: DESeq2 PCA plot: paired analysis
8.9 years ago g.atla ▴ 10
0
votes
0
replies
1.8k
views
Comment: C: Paired analysis and batch effects ?
8.9 years ago g.atla ▴ 10
2
votes
2
replies
1.8k
views
Paired analysis and batch effects ?
ruvseq sva edger
updated 8.9 years ago by ★ 7.9k • written 8.9 years ago by ▴ 10
0
votes
0
replies
2.5k
views
Answer: A: RUVg or RUVs
8.9 years ago g.atla ▴ 10
2
votes
4
replies
9.3k
views
DESeq2 PCA plot: paired analysis
deseq2 pca
8.9 years ago g.atla ▴ 10
0
votes
0
replies
1.4k
views
Comment: C: off-target effects in DE analysis
8.9 years ago g.atla ▴ 10
0
votes
1
reply
1.4k
views
Comment: C: off-target effects in DE analysis
8.9 years ago g.atla ▴ 10
4
votes
7
replies
1.4k
views
off-target effects in DE analysis
edger differential gene expression
updated 8.9 years ago by ★ 28k • written 8.9 years ago by ▴ 10
0
votes
0
replies
1.4k
views
Comment: C: off-target effects in DE analysis
8.9 years ago g.atla ▴ 10
32 results • Page 1 of 1
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