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Handling multiple differential expression comparisons
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5 minutes ago • updated 4 minutes ago Zainab • 0
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dba.plotProfile() plotting and interpretation
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57 minutes ago • updated 52 minutes ago Henry ▴ 10
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NEED FOR NESSASORY HELP
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updated 19 hours ago by 50k • written 23 hours ago by • 0
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Gene-by-sample covariates in limma
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Why does GSEA on edgeR results for randomized samples give highly significant p-values?
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updated 14 hours ago by 50k • written 22 hours ago by ▴ 10
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Once again a "Model matrix not full rank"
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1 day ago • updated 18 hours ago kcarey • 0
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Timecourse RNASeq analysis
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One error problem occurred caused by data type during using GDCprepare function of TCGAbiolinks to handle TCGAbiolinks BRCA data
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8 days ago • updated 9 hours ago glaciya2018 • 0
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Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis by Aurora • 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
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A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
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