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114

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MAplot

1 day ago • updated 10 hours ago Nathalie • 0

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edgeR RNAseq

updated 6 hours ago by Gordon Smyth 47k • written 14 hours ago by k.roelfs • 0

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biomaRt getLDS

18 hours ago • updated 31 minutes ago Eric • 0

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DESeq2 PackageTypeData package Annotation

updated 15 hours ago by Mike Smith ★ 5.8k • written 16 hours ago by m-bihie • 0

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heatma heatmaps ComplexHeatmap

updated 18 hours ago by elefth.pavlos ▴ 20 • written 2 days ago by Sooni • 0

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100

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DESeq2 designmatrix edgeR limma tidybulk

updated 11 hours ago by Michael Love 39k • written 23 hours ago by aditya.m ▴ 10

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ComplexHeatmap Complex

updated 19 hours ago by elefth.pavlos ▴ 20 • written 1 day ago by Katharina • 0

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DESeq

updated 20 hours ago by ATpoint ★ 2.0k • written 1 day ago by m-bihie • 0

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DESeq2 SummarizedExperiment DelayedArray

updated 20 hours ago by ATpoint ★ 2.0k • written 1 day ago by Danielle • 0

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ensembldb biodbUniprot

updated 14 hours ago by James W. MacDonald 62k • written 1 day ago by Peter • 0

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BioC2023 Bioconductor community

1 day ago • updated 19 hours ago Maria Doyle ▴ 10

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NanoporeRNASeq LongRead Normalization ShortRead IlluminaRNASeq

3 days ago • updated 6 hours ago Bernardo • 0

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169

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recountWorkflow recount3

updated 12 hours ago by Leonardo Collado Torres ★ 1.0k • written 5 weeks ago by soevertje ▴ 20

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ChipQCReport

updated 7 hours ago by Okan • 0 • written 8 weeks ago by stacy.genovese • 0

14 results • Page 1 of 1

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Comment: transcript name mapping between human and mouse by Eric • 0

It works very well, and thanks for such a great answer! Because I use the old version gtf from GENECODE (vM12), the id version does not mat…

Comment: How to normalize long-read RNA-seq data for comparison with short-reads by Bernardo • 0

Just did that, thank you for the suggestion.

Comment: Empty ChipQC Report by Okan • 0

Hi, I have the same issue. Have you found any solution or any reason why this is happening?

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

Am I understanding correctly that you have 24 RNA-seq libraries in total, 6 from the pooled samples and 18 from regular samples with biolog…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

I'm sorry, I know it is kinda confusing... We have 6 pools in total: Phenotype A: T1a, T2, T1b, T1c Phenotype B: T1, T2 Each pool consist…

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Answer: transcript name mapping between human and mouse

Comment: How to normalize long-read RNA-seq data for comparison with short-reads

Volcano Plot in R

Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.

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