Bioconductor Forum

vote

views

microbiome

updated 4 hours ago by Leo Lahti ▴ 40 • written 16 hours ago by Dario Strbenac ★ 1.5k

votes

replies

101

views

DESeq2 PCAtools

updated 12 hours ago by Michael Love 41k • written 2 days ago by Aaliya • 0

vote

replies

views

DESeq2 celda

updated 14 hours ago by Michael Love 41k • written 1 day ago by JalapenoCornbread • 0

votes

views

DiffBind

updated 15 hours ago by ATpoint ★ 4.0k • written 2 days ago by Shloka • 0

votes

views

RNAseq123

updated 19 hours ago by Gordon Smyth 50k • written 4 days ago by Lluís Revilla Sancho ▴ 730

vote

replies

145

views

EnhancedVolcano

1 day ago • updated 10 hours ago pl23 • 0

vote

replies

193

views

DESeq2

2 days ago • updated 21 hours ago winwater0928 • 0

vote

replies

224

views

DESeq2

9 days ago • updated 13 hours ago ussarizona ▴ 10

8 results • Page 1 of 1

Recent ...

Replies

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

Awards • All