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7
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Math expression in shapeCustom legend in EnhancedVolcano
EnhancedVolcano
1 day ago • updated 4 hours ago pl23 • 0
0
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1
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91
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Improving the design matrices vignette in RNAseq123
RNAseq123
updated 13 hours ago by 50k • written 4 days ago by ▴ 730
1
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4
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Opposite sign of LFC in count plots of DEGs (DESeq2)
DESeq2
2 days ago • updated 15 hours ago winwater0928 • 0
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ATACseq merge peaks
DiffBind
updated 9 hours ago by ★ 4.0k • written 2 days ago by • 0
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3
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Deseq2. decontXcounts not integers. Useful alternative?
DESeq2 celda
updated 8 hours ago by 41k • written 1 day ago by • 0
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2
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DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
DESeq2
9 days ago • updated 7 hours ago ussarizona ▴ 10
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PCA plot suggestions
DESeq2 PCAtools
updated 6 hours ago by 41k • written 1 day ago by • 0
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Dominance Index for Shotgun Metagenomics Data
microbiome
10 hours ago Dario Strbenac ★ 1.5k
8 results • Page 1 of 1
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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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