Bioconductor Forum

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DESeq2 celda

10 hours ago JalapenoCornbread • 0

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EnhancedVolcano

updated 8 hours ago by James W. MacDonald 65k • written 13 hours ago by pl23 • 0

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215

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DESeq2 RUVSeq RUVseq BatchEffect DES

updated 10 hours ago by James W. MacDonald 65k • written 18 hours ago by Alexandre • 0

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GDCRNATools TCGA

22 hours ago glaciya2018 • 0

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DESeq2 PCAtools

updated 16 hours ago by JKim • 0 • written 1 day ago by Aaliya • 0

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scran BiocParallel bluster

1 day ago • updated 23 hours ago ATpoint ★ 4.0k

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133

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DESeq2

1 day ago • updated 11 minutes ago winwater0928 • 0

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144

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GO.db goTools

updated 14 hours ago by James W. MacDonald 65k • written 2 days ago by bandconductor • 0

8 results • Page 1 of 1

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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

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Scholar to James W. MacDonald 65k

Supporter to JKim • 0