0
votes
1
reply
1.8k
views
topGO analysis returns different gene counts for category than given for non-model organism
GO Category topGO GO Category topGO
updated 12.3 years ago by ★ 6.8k • written 12.3 years ago by ▴ 20
0
votes
2
replies
1.7k
views
DEseq for paired samples
updated 12.3 years ago by ▴ 200 • written 12.3 years ago by ▴ 10
0
votes
0
replies
914
views
Can I input ordinal variables into a model in Limma?
Microarray limma Microarray limma
12.3 years ago Guest User ★ 13k
0
votes
0
replies
1.6k
views
Job in GWAS / Next Gen Sequencing / genetics
Sequencing Genetics Sequencing Genetics
12.3 years ago Paul Leo ▴ 970
0
votes
1
reply
886
views
Genes, their domains, and a list of superimposed mutations
updated 12.3 years ago by 25k • written 12.3 years ago by ★ 13k
0
votes
0
replies
3.4k
views
DiffBind questions
Transcription Cancer DiffBind MMDiff Transcription Cancer DiffBind MMDiff
12.3 years ago Rory Stark ★ 5.2k
0
votes
0
replies
734
views
EdgeR
edgeR edgeR
12.3 years ago Gordon Smyth 53k
0
votes
0
replies
1.6k
views
Chr Info for array CGH - agilent 60K
CGH CGH
12.3 years ago Cian Murphy ▴ 40
0
votes
0
replies
933
views
confusing P-value of one gene
edgeR edgeR
12.3 years ago Gordon Smyth 53k
0
votes
1
reply
1.2k
views
tweeDEseq glm reduced model specification?
tweeDEseq tweeDEseq
updated 12.3 years ago by ▴ 20 • written 12.3 years ago by ★ 7.9k
0
votes
5
replies
1.8k
views
Mapping Affymetrix annotations with Bioconductor annotations
updated 12.3 years ago by 68k • written 12.3 years ago by ▴ 80
0
votes
1
reply
1.6k
views
Depth of Coverage and Base counts from BAM file
updated 12.3 years ago by ★ 1.3k • written 12.3 years ago by ★ 13k
0
votes
5
replies
2.7k
views
Change enzyme code (EC) into gene symbol
updated 12.3 years ago by ★ 1.6k • written 12.3 years ago by ▴ 230
0
votes
2
replies
3.1k
views
BiomaRt and archival versions of ensembl_mart
biomaRt biomaRt
updated 12.3 years ago by ▴ 540 • written 12.3 years ago by ▴ 50
0
votes
0
replies
777
views
Error while background correction
GO probe GO probe
12.3 years ago kunal jha ▴ 10
0
votes
3
replies
4.2k
views
EdgeR: getting CPM values after batch effect correction
edgeR edgeR
updated 12.3 years ago by ★ 7.9k • written 12.3 years ago by ▴ 90
0
votes
0
replies
1.5k
views
Annotating Results for HuEx 1.0 STv2 - Oligo
annotate oligo annotate oligo
12.3 years ago Bade ▴ 310
0
votes
0
replies
1.3k
views
tweeDEseq main paper
edgeR tweeDEseq edgeR tweeDEseq
12.3 years ago Gonzalez Ruiz, Juan Ramon ▴ 20
0
votes
0
replies
1.7k
views
Gene Vs Transcript level Differential expression analysis
edgeR Rsubread edgeR Rsubread
12.3 years ago Alan Smith ▴ 150
0
votes
0
replies
1.1k
views
question on ChIPpeakAnno::getEnrichedGO
GO ChIPpeakAnno GO ChIPpeakAnno
12.3 years ago Julie Zhu ★ 4.3k
0
votes
5
replies
2.1k
views
Finding my un-counted reads
Sequencing rtracklayer ShortRead GenomicRanges Sequencing rtracklayer ShortRead
updated 12.3 years ago by ★ 6.8k • written 12.3 years ago by ▴ 300
0
votes
0
replies
839
views
beadarray\'s processSwathData for HumanHT12v4, with 3 swaths
12.3 years ago Guest User ★ 13k
0
votes
0
replies
923
views
enrichment packages that accept t-stat (or related stat) as input
limma gage limma gage
12.3 years ago Luo Weijun ★ 1.6k
0
votes
6
replies
1.9k
views
minfi: control probes sequence
Annotation Annotation
updated 12.3 years ago by ★ 4.2k • written 12.3 years ago by ▴ 190
0
votes
4
replies
5.0k
views
Problem reading Cel files - Oligo Package
Annotation oligo Annotation oligo
updated 12.3 years ago by 68k • written 12.3 years ago by ▴ 310
0
votes
3
replies
2.3k
views
edgeR topTags output (logFC)
edgeR edgeR
updated 12.3 years ago by 53k • written 12.3 years ago by ★ 13k
2
votes
0
replies
2.3k
views
Complex Limma design: technical replication, biological replication and repeated experiment
Microarray limma Microarray limma
12.3 years ago Gordon Smyth 53k
0
votes
0
replies
1.1k
views
Job: Bioinformatician (m/f) Core Facility - Mainz, Germany
12.3 years ago Holger Klein ▴ 20
0
votes
1
reply
855
views
import only partial samples of an array
updated 12.3 years ago by ▴ 440 • written 12.3 years ago by ★ 13k
0
votes
0
replies
767
views
edgeR
edgeR edgeR
12.3 years ago Joanne.Lee@csiro.au ▴ 10
0
votes
2
replies
1.5k
views
'version' is missing error when running makeTxDbPackageFromUCSC
TranscriptDb IRanges TranscriptDb IRanges
updated 12.3 years ago by ★ 8.2k • written 12.3 years ago by ▴ 40
0
votes
0
replies
1.3k
views
Package/Function for Single Channel Microarray Spatial Normalization?
marray OLIN marray OLIN
12.3 years ago Guest User ★ 13k
0
votes
0
replies
2.5k
views
makeTranscriptDbFromGFF fails on NCBI Bacteria
Alignment Annotation Normalization GO Preprocessing Clustering Cancer Organism probe GLAD
12.3 years ago Sarah Pohl ▴ 30
0
votes
1
reply
732
views
Hello, reading large Affymetrix microarrays .CEL files
updated 12.3 years ago by ★ 13k • written 12.3 years ago by ▴ 20
0
votes
1
reply
1.7k
views
Using the genes.count-tracking file from cuffdiff in DESeq
DESeq DESeq
updated 12.3 years ago by 43k • written 12.3 years ago by ★ 13k
1
vote
0
replies
1.6k
views
Fwd: GViz trouble retreiving X chromosome data with BiomartGeneRegionTrack
Annotation ideogram Gviz Annotation ideogram Gviz
12.3 years ago Martin Rijlaarsdam ▴ 190
0
votes
1
reply
1.5k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
12.3 years ago Nitesh Turaga ▴ 50
0
votes
0
replies
878
views
confusing P-value (from egdeR) of one gene
edgeR edgeR
12.3 years ago Xinwei Han ▴ 30
1
vote
3
replies
2.3k
views
Bug in makeOrgPackageFromNCBI from AnnotationForge?
Alignment Annotation Organism Schizosaccharomyces pombe biomaRt AnnotationForge Alignment
updated 12.3 years ago by ★ 7.2k • written 12.3 years ago by ▴ 220
0
votes
0
replies
1.6k
views
EdgeR annotation
Annotation edgeR Annotation edgeR
12.3 years ago Gordon Smyth 53k
0
votes
1
reply
1.7k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 12.3 years ago by ★ 4.3k • written 12.3 years ago by ▴ 50
0
votes
2
replies
2.1k
views
BiomaRt useMart() issues
GO GO
updated 12.3 years ago by ▴ 540 • written 12.3 years ago by ▴ 200
0
votes
0
replies
1.2k
views
PhD position in Epigenetic mechanisms Bioinformatics and Modeling- University of Cambridge
12.3 years ago Pietro Lio' ▴ 10
0
votes
0
replies
1.1k
views
Complex Limma design: technical replication, biological replication and repeated experiment
Microarray limma Microarray limma
12.3 years ago Guest User ★ 13k
0
votes
0
replies
866
views
Course: Understanding R / Bioconductor, Sept 30-Oct 1, Seattle
Cancer Biostrings biomaRt IRanges GenomicRanges Cancer Biostrings biomaRt IRanges
12.3 years ago Martin Morgan 25k
0
votes
0
replies
1.1k
views
edgeR annotation mission from topTags output
edgeR edgeR
12.3 years ago Guest User ★ 13k
0
votes
1
reply
1.3k
views
HTqPCR normalization issue ?
Normalization HTqPCR Normalization HTqPCR
updated 12.3 years ago by ★ 8.2k • written 12.3 years ago by ★ 13k
0
votes
1
reply
884
views
DESeq query
GO DESeq GO DESeq
updated 12.3 years ago by 43k • written 12.3 years ago by ▴ 40
0
votes
2
replies
663
views
SeqGSEA estiGeneNBstat()
updated 12.3 years ago by ▴ 40 • written 12.3 years ago by ▴ 10
0
votes
0
replies
1.6k
views
error while using goProfiles package on arabidopsis entrez gene IDs
GO Organism goProfiles GO Organism goProfiles
12.3 years ago Marc Carlson ★ 7.2k
46,699 results • Page 528 of 934
Recent ...
Replies
Comment: PFAM formats changed - is it still possible to use this with ISA? by TikTsokaasocissalpc • 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by aqeel • 0
Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k
I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Istvan Albert ▴ 50
Popular Question to Dario Strbenac ★ 1.6k
Scholar to Nikos Ignatiadis ▴ 180
Locations • All
United States, 9 minutes ago
The city by the bay, 1 hour ago
WEHI, Melbourne, Australia, 3 hours ago
Pakistan, 6 hours ago
United States, 6 hours ago
Traffic: 593 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6