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Reading Illumina data from GenomeStudio in limma
probe
lumi
probe
lumi
updated 12.4 years ago by
Wei Shi
★ 3.6k • written 12.4 years ago by
Guest User
★ 13k
0
votes
6
replies
7.1k
views
RSEM for transcript and gene level read count and edgeR differential expression analysis
edgeR
edgeR
updated 12.4 years ago by
Steve Lianoglou
★ 13k • written 12.4 years ago by
Alan Smith
▴ 150
0
votes
0
replies
2.4k
views
Fwd: ComBat_ Error in solve.default(t(design) %*% design) : Lapack routine dgesv: system is exactly singular
12.4 years ago
Dr J. Peters
▴ 30
0
votes
0
replies
1.4k
views
Fwd: ComBat_ Error in solve.default(t(design) %*% design) : Lapack routine dgesv: system is exactly singular: U[4, 4] = 0
12.4 years ago
amit kumar subudhi
▴ 130
0
votes
2
replies
2.5k
views
Converting \"data.frame\" to appropriate format for tau.dist() in bioDist library
bioDist
bioDist
updated 12.4 years ago by
Paul Shannon
▴ 470 • written 12.4 years ago by
Guest User
★ 13k
0
votes
0
replies
1.3k
views
ComBat_ Error in solve.default(t(design) %*% design) : Lapack routine dgesv: system is exactly singular: U[4, 4] = 0
12.4 years ago
amit kumar subudhi
▴ 130
0
votes
3
replies
1.4k
views
Annotate blastSequences Returns No Result
annotate
annotate
updated 12.4 years ago by
Martin Morgan
25k • written 12.4 years ago by
Dario Strbenac
★ 1.6k
0
votes
3
replies
1.9k
views
XPS package QC data
affy
arrayQualityMetrics
xps
affy
arrayQualityMetrics
xps
updated 12.4 years ago by
cstrato
★ 3.9k • written 12.4 years ago by
b a
▴ 40
0
votes
0
replies
1.4k
views
Opportunity at the Laboratory for Personalized Medicine with Harvard Medical School
12.4 years ago
Doe, Aimee
▴ 40
0
votes
9
replies
2.8k
views
RNA degradation plot with oligo package GeneFeatureSet objects
affy
oligo
affy
oligo
updated 12.4 years ago by
James W. MacDonald
68k • written 12.4 years ago by
heyi xiao
▴ 360
0
votes
3
replies
3.4k
views
MEDIPS, GRanges, IRanges error processing BAM file
Alignment
BSgenome
PROcess
BSgenome
IRanges
MEDIPS
Alignment
BSgenome
PROcess
BSgenome
updated 12.4 years ago by
Lukas Chavez
▴ 570 • written 12.4 years ago by
Jonathan Ellis
▴ 40
0
votes
1
reply
902
views
RMA probe summarization when sizes of probesets are unequal
Microarray
Normalization
probe
oligo
Microarray
Normalization
probe
oligo
updated 12.4 years ago by
James W. MacDonald
68k • written 12.4 years ago by
Guest User
★ 13k
1
vote
3
replies
3.2k
views
Problem with RIPSeeker
biomaRt
RIPSeeker
biomaRt
RIPSeeker
updated 12.4 years ago by
António Miguel de Jesus Domingues
▴ 510 • written 12.4 years ago by
Nicola Cole
▴ 30
0
votes
0
replies
1.1k
views
Connectionists: Open position for an Experienced Researcher at Johannes Kepler University Linz, Austria
Coverage
PROcess
Coverage
PROcess
12.4 years ago
Secretary Institute of Bioinformatics
▴ 20
0
votes
0
replies
1.2k
views
Open position for an Experienced Researcher at Johannes Kepler University Linz, Austria
Coverage
Coverage
12.4 years ago
Secretary Institute of Bioinformatics
▴ 20
0
votes
4
replies
4.1k
views
Pathview for global and overview maps Re: using pathview about hsa01100
Pathways
graph
PROcess
SIM
gage
pathview
Pathways
graph
PROcess
SIM
gage
pathview
updated 12.4 years ago by
Ed
▴ 230 • written 12.4 years ago by
Luo Weijun
★ 1.6k
0
votes
2
replies
1.4k
views
MEDIPS no longer producing AMS values
Sequencing
MEDIPS
Sequencing
MEDIPS
updated 12.4 years ago by
Lukas Chavez
▴ 570 • written 12.4 years ago by
Jonathan Ellis
▴ 40
0
votes
5
replies
2.8k
views
problem generating Chinese hamster txdb from GFF file
GO
GenomicFeatures
GO
GenomicFeatures
updated 5 months ago by
Farmwald
• 0 • written 12.4 years ago by
Guido Hooiveld
★ 4.1k
0
votes
3
replies
2.5k
views
Diffbind: Binding Affinity Heatmap
Sequencing
GO
Clustering
GLAD
edgeR
DESeq
DiffBind
Sequencing
GO
Clustering
GLAD
edgeR
12.4 years ago
Rory Stark
★ 5.2k
0
votes
1
reply
3.0k
views
Problem with importing bigWig file from GEO with rtracklayer?
rtracklayer
rtracklayer
updated 12.4 years ago by
Dario Strbenac
★ 1.6k • written 12.4 years ago by
wrighth
▴ 260
0
votes
4
replies
2.2k
views
Phred encoding
updated 12.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.4 years ago by
Taylor, Sean D
▴ 250
0
votes
1
reply
1.7k
views
SKAT package on CRAN
updated 12.4 years ago by
Dan Tenenbaum
★ 8.2k • written 12.4 years ago by
Cian Murphy
▴ 40
0
votes
2
replies
7.0k
views
DESeq2 dependency hell
DESeq2
DESeq2
updated 12.4 years ago by
James W. MacDonald
68k • written 12.4 years ago by
Guest User
★ 13k
0
votes
4
replies
1.5k
views
I need BSgenome for Eucalyptus grandis
BSgenome
BSgenome
MEDIPS
BSgenome
BSgenome
MEDIPS
updated 12.4 years ago by
Marc Carlson
★ 7.2k • written 12.4 years ago by
Guest User
★ 13k
0
votes
1
reply
4.8k
views
SVA package error message: Error in diag(dims[2]) - mod %*% solve(t(mod) %*% mod) %*% t(mod) : non-conformable arrays
sva
sva
12.4 years ago
Ying Chen
▴ 110
2
votes
1
reply
1.0k
views
returning an objects GLCM using EBImage
updated 12.4 years ago by
Gregoire Pau
▴ 60 • written 12.4 years ago by
David Stephens Cefas
▴ 20
0
votes
1
reply
1.5k
views
Matrix package bug?
updated 12.4 years ago by
Martin Morgan
25k • written 12.4 years ago by
arne.mueller@novartis.com
▴ 200
0
votes
4
replies
22k
views
Unable to find an inherited method for function ‘exprs’
Biobase
GEOquery
virtualArray
Biobase
GEOquery
virtualArray
updated 12.4 years ago by
Wolfgang Huber
★ 13k • written 12.4 years ago by
Dave Tang
▴ 210
0
votes
1
reply
798
views
edgeR v2.6 vs. v3.2.4
edgeR
edgeR
updated 12.4 years ago by
Ryan C. Thompson
★ 7.9k • written 12.4 years ago by
Guest User
★ 13k
0
votes
8
replies
3.3k
views
Affy: probeset to gene expression with expresso
probe
affy
probe
affy
updated 12.4 years ago by
James W. MacDonald
68k • written 12.4 years ago by
Martin Preusse
▴ 50
0
votes
3
replies
1.4k
views
BUG? when setting mcols of a GRanges to a DataFrame one of whose columns is an ordered factor
updated 12.4 years ago by
Hervé Pagès
16k • written 12.4 years ago by
Malcolm Cook
★ 1.6k
0
votes
2
replies
1.5k
views
take the average log fc for each gene
updated 12.4 years ago by
James W. MacDonald
68k • written 12.4 years ago by
Helen Smith
▴ 100
0
votes
1
reply
1.3k
views
defining accessors (cols, keys, keytypes, select) for annotation package built with AnnotationForge package
Annotation
Organism
AnnotationDbi
Annotation
Organism
AnnotationDbi
updated 12.4 years ago by
Marc Carlson
★ 7.2k • written 12.4 years ago by
Rameswara Sashi Kiran Challa
▴ 30
0
votes
0
replies
2.6k
views
topgo GO mapping for non model organisms
Annotation
GO
Organism
topGO
Annotation
GO
Organism
topGO
12.4 years ago
km
▴ 100
0
votes
2
replies
2.0k
views
GViz - successes and a few hopes
annotate
Gviz
annotate
Gviz
updated 12.4 years ago by
florian.hahne@novartis.com
★ 1.6k • written 12.4 years ago by
Malcolm Cook
★ 1.6k
6
votes
3
replies
2.5k
views
ComBat: Could it utilize technical replicates?
updated 12.4 years ago by
W. Evan Johnson
▴ 870 • written 12.4 years ago by
Essi Laajala
▴ 50
0
votes
2
replies
4.6k
views
TranscriptDb of GENCODE Genes
Transcription
Annotation
Transcription
Annotation
updated 12.4 years ago by
Marc Carlson
★ 7.2k • written 12.4 years ago by
Dario Strbenac
★ 1.6k
0
votes
1
reply
1.8k
views
cummeRbund installation Error
cummeRbund
cummeRbund
updated 12.4 years ago by
Dan Tenenbaum
★ 8.2k • written 12.4 years ago by
Sridhar Srinivasan
▴ 10
0
votes
12
replies
2.3k
views
combining/merging several ExpressionSet objects from SCAN
updated 12.4 years ago by
W. Evan Johnson
▴ 870 • written 12.4 years ago by
Juliet Hannah
▴ 360
0
votes
0
replies
1.5k
views
Reopening of Computational Biologist position at Genentech
Infrastructure
PROcess
Infrastructure
PROcess
12.4 years ago
Michael Lawrence
★ 11k
1
vote
4
replies
5.1k
views
[topGO] More flexible way to select 'interesting' genes
GO
probe
topGO
GO
probe
topGO
updated 12.4 years ago by
Adrian Alexa
▴ 400 • written 12.4 years ago by
enricoferrero
▴ 680
0
votes
5
replies
1.5k
views
Measuring shifts in intronic expression independently of exons
updated 12.4 years ago by
Wolfgang Huber
★ 13k • written 12.4 years ago by
James Perkins
▴ 120
0
votes
4
replies
5.0k
views
Limma, model with several factors
limma
limma
updated 12.4 years ago by
Gordon Smyth
53k • written 12.4 years ago by
Jenny Drnevich
★ 2.0k
0
votes
1
reply
2.6k
views
GWASTools
cdf
GWASTools
cdf
GWASTools
12.4 years ago
Stephanie M. Gogarten
▴ 890
0
votes
2
replies
1.4k
views
*Ranges paper published
Infrastructure
IRanges
GenomicFeatures
GenomicRanges
Infrastructure
IRanges
GenomicFeatures
updated 12.4 years ago by
Tim Triche
★ 4.2k • written 12.4 years ago by
Michael Lawrence
★ 11k
0
votes
1
reply
1.3k
views
beadarray library: perBeadFile
GLAD
beadarray
GLAD
beadarray
updated 12.4 years ago by
Mike Smith
★ 6.6k • written 12.4 years ago by
Nogales Vilardell
▴ 10
0
votes
0
replies
1.5k
views
bioMart GO inconsistency, normal?
GO
biomaRt
GO
biomaRt
12.4 years ago
R Tagett
▴ 30
0
votes
1
reply
1.2k
views
FW: DWD method for batch effect removal
updated 12.4 years ago by
Dan Tenenbaum
★ 8.2k • written 12.4 years ago by
Li Liu
▴ 100
0
votes
0
replies
1.4k
views
回复: Re: fRMA package
affxparser
frma
GenomicRanges
affxparser
frma
GenomicRanges
12.4 years ago
Hanyine
▴ 30
0
votes
4
replies
1.8k
views
IRanges::unlist in package
rtracklayer
IRanges
GenomicFeatures
Rsamtools
rtracklayer
IRanges
GenomicFeatures
Rsamtools
updated 12.4 years ago by
James W. MacDonald
68k • written 12.4 years ago by
Marco Blanchette
▴ 220
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