0
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1
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879
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NAs as result for enrichPathway
updated 12.4 years ago by ▴ 20 • written 12.4 years ago by ★ 13k
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matchTable for pairwiseAlignment in Biostrings?
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TxDb.Hsapiens.UCSC.hg19.knownGene: seqlevels() vs isActive()
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error while using goProfiles package on arabidopsis entrez gene IDs
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12.4 years ago Guest User ★ 13k
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error of \"subscript out of bounds\" while applying basicProfile func
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ComBat_ Error in solve.default(t(design) %*% design): Lapack routine dgesv: system is exactly singular: U[4, 4] = 0
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error of \"subscript out of bounds\" while applying basicProfile func
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EdgeR: sRNA analysis check
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updated 12.4 years ago by ★ 13k • written 12.4 years ago by ▴ 150
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relations package
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A problem
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updated 12.4 years ago by 25k • written 12.4 years ago by ▴ 10
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Bioconductor Job Opportunities
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DiffBind - Dropbox containing vignette data
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merge on DataFrame forcing character->factor
updated 12.4 years ago by ★ 11k • written 12.4 years ago by ▴ 70
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how to do the time series analysis?
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updated 12.4 years ago by ▴ 10 • written 12.4 years ago by ★ 2.0k
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HTqPCR package
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12.4 years ago VETTER Guillaume ▴ 10
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Order within a GRanges object
updated 12.4 years ago by ★ 1.6k • written 12.5 years ago by ▴ 170
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mirDeep2 edgeR analysis
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[GenomicRanges] subsetByOverlaps to keep info from both GRanges objects?
updated 12.4 years ago by ★ 6.8k • written 12.4 years ago by ▴ 680
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defining accessors (cols, keys, keytypes, select) for annotation package built with AnnotationForge package
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12.5 years ago • updated 12.4 years ago Sashi ▴ 20
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question about package AgiMicroRna
Normalization GO vsn Normalization GO vsn
12.4 years ago Guest User ★ 13k
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saving GRanges objects - resulting file size issue
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updated 12.5 years ago by ★ 6.8k • written 12.5 years ago by ▴ 120
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GenomeStudio output and lumi
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12.5 years ago Sanja Rogic ▴ 10
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Reading Illumina data from GenomeStudio in limma
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updated 12.5 years ago by ★ 3.6k • written 12.5 years ago by ★ 13k
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RSEM for transcript and gene level read count and edgeR differential expression analysis
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updated 12.5 years ago by ★ 13k • written 12.5 years ago by ▴ 150
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Fwd: ComBat_ Error in solve.default(t(design) %*% design) : Lapack routine dgesv: system is exactly singular
12.5 years ago Dr J. Peters ▴ 30
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Fwd: ComBat_ Error in solve.default(t(design) %*% design) : Lapack routine dgesv: system is exactly singular: U[4, 4] = 0
12.5 years ago amit kumar subudhi ▴ 130
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Converting \"data.frame\" to appropriate format for tau.dist() in bioDist library
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updated 12.5 years ago by ▴ 470 • written 12.5 years ago by ★ 13k
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ComBat_ Error in solve.default(t(design) %*% design) : Lapack routine dgesv: system is exactly singular: U[4, 4] = 0
12.5 years ago amit kumar subudhi ▴ 130
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Annotate blastSequences Returns No Result
annotate annotate
updated 12.5 years ago by 25k • written 12.5 years ago by ★ 1.6k
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XPS package QC data
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updated 12.5 years ago by ★ 3.9k • written 12.5 years ago by ▴ 40
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Opportunity at the Laboratory for Personalized Medicine with Harvard Medical School
12.5 years ago Doe, Aimee ▴ 40
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RNA degradation plot with oligo package GeneFeatureSet objects
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updated 12.5 years ago by 68k • written 12.5 years ago by ▴ 360
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MEDIPS, GRanges, IRanges error processing BAM file
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updated 12.5 years ago by ▴ 570 • written 12.5 years ago by ▴ 40
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RMA probe summarization when sizes of probesets are unequal
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updated 12.5 years ago by 68k • written 12.5 years ago by ★ 13k
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Problem with RIPSeeker
biomaRt RIPSeeker biomaRt RIPSeeker
updated 12.5 years ago by ▴ 510 • written 12.5 years ago by ▴ 30
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Connectionists: Open position for an Experienced Researcher at Johannes Kepler University Linz, Austria
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12.5 years ago Secretary Institute of Bioinformatics ▴ 20
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12.5 years ago Secretary Institute of Bioinformatics ▴ 20
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Pathview for global and overview maps Re: using pathview about hsa01100
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updated 12.5 years ago by ▴ 230 • written 12.5 years ago by ★ 1.6k
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MEDIPS no longer producing AMS values
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updated 12.5 years ago by ▴ 570 • written 12.5 years ago by ▴ 40
0
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problem generating Chinese hamster txdb from GFF file
GO GenomicFeatures GO GenomicFeatures
updated 6 months ago by • 0 • written 12.5 years ago by ★ 4.1k
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Diffbind: Binding Affinity Heatmap
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12.5 years ago Rory Stark ★ 5.2k
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Problem with importing bigWig file from GEO with rtracklayer?
rtracklayer rtracklayer
updated 12.5 years ago by ★ 1.6k • written 12.5 years ago by ▴ 260
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votes
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Phred encoding
updated 12.5 years ago by 6.7k • written 12.5 years ago by ▴ 250
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Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Comment: limpa analysis advice by Gordon Smyth 53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k
As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Michael Love 43k
Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…
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Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
Answer: Array weights in dpcDE
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