0
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6
replies
2.0k
views
Creating an OrganismDbi package with a few transcript annotations
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updated 12.6 years ago by 25k • written 12.6 years ago by ★ 11k
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[devteam-bioc] sort error in GRange
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updated 12.6 years ago by 25k • written 12.6 years ago by ▴ 300
0
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Reminder: Course: Intermediate R / Bioconductor for High-Throughput Sequence Analysis, 28-29 May, Seattle
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updated 12.6 years ago by ★ 13k • written 12.6 years ago by ▴ 10
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how to deal with antisense gene in DESeq or edgeR?
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looking for tools to study additive expression effects in gene pathways/networks
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12.6 years ago Christopher T Gregg ▴ 210
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topGO desperation
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12.6 years ago Oertlin, Christian Stud. FHML ▴ 20
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DiffBind - error dba-count
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updated 12.6 years ago by ★ 5.2k • written 12.6 years ago by ▴ 350
0
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1.1k
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Bug when running Gviz::GenomeAxisTrack and highlighting region in axis
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0
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library(\"geneplotter\") fails on load
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12.6 years ago Guest User ★ 13k
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7
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edgeR warning message when running Trended Dispersion
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updated 12.6 years ago by 53k • written 12.6 years ago by ▴ 440
0
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0
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812
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meme/fimo output parser?
12.6 years ago Vincent J. Carey, Jr. 6.7k
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1
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an error in HeatPlus package
Heatplus Heatplus
updated 12.6 years ago by ★ 8.2k • written 12.6 years ago by ▴ 100
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timecourse for RNA-seq data
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12.6 years ago Guest User ★ 13k
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gmapR problem using a GmapGenome package with gsnap()
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[Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
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updated 12.6 years ago by ★ 13k • written 12.6 years ago by ▴ 330
0
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1
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963
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summarizeOverlaps, inter.feature=FALSE and mode="IntersectionNotEmpty"
updated 12.6 years ago by ★ 6.8k • written 12.6 years ago by ★ 1.7k
0
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0
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Combining differential gene expression on 2 reference transcriptomes: EdgeR analysis
edgeR edgeR
12.6 years ago Gordon Smyth 53k
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Job Opportunity: Senior Bioinformatics Analyst at the University of Cambridge (Cancer Research UK)
12.6 years ago Rory Stark ★ 5.2k
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limma: NA coefficients due to missing values
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updated 12.6 years ago by 53k • written 12.6 years ago by ▴ 720
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summarizeOverlaps, inter.feature=FALSE and mode="IntersectionNotEmpty"
updated 12.6 years ago by ★ 6.8k • written 12.6 years ago by 43k
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7
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VariantAnnotation: Performance and memory issues in readVcf
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updated 12.6 years ago by 6.7k • written 12.6 years ago by ▴ 300
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RTPCR - concentration rather than Ct
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12.6 years ago Lavinia Gordon ▴ 480
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Help with nparLD package: Non-parametric repeated measures
updated 12.6 years ago by 68k • written 12.6 years ago by ★ 13k
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summarizeOverlaps mode ignoring inter feature overlaps
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updated 12.6 years ago by ★ 1.7k • written 12.6 years ago by ★ 6.8k
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SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?
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updated 12.6 years ago by ▴ 20 • written 12.6 years ago by ▴ 600
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Gviz
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updated 12.6 years ago by ★ 1.6k • written 12.6 years ago by ★ 13k
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help with flowQ vignette
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updated 12.6 years ago by ★ 8.2k • written 12.6 years ago by ▴ 100
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Queries about getting annotation post-Limma analysis
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12.6 years ago Natasha ▴ 440
1
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10
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Statistics question for multi-factor interaction test in edgeR
updated 12.6 years ago by 53k • written 12.6 years ago by ▴ 70
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6
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Advice on reading big BED/BAM and ChIP-seq quality control
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updated 12.6 years ago by ▴ 350 • written 12.6 years ago by ▴ 240
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VCF class: different length when unlisting INFO CompressedCharacterList
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updated 12.6 years ago by ★ 6.8k • written 12.6 years ago by ▴ 380
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Nearest Template Prediction?
updated 12.6 years ago by ★ 4.2k • written 12.6 years ago by ▴ 30
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Combining differential gene expression on 2 reference transcriptomes: EdgeR analysis
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4
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Accessing old versions of bioc packages
cycle cycle
updated 12.6 years ago by ★ 8.2k • written 12.6 years ago by ★ 1.3k
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HTqPCR error when reading data
12.6 years ago Magdalena Wozniak ▴ 50
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Gviz problem with chr16
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updated 12.6 years ago by ★ 1.6k • written 12.6 years ago by ★ 13k
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Bug when running Gviz::GenomeAxisTrack and highlighting region in axis
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VariantAnnotation and distance to genes
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DESeq Variance Stabilizing Transformation
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GOseq
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12.6 years ago Guest User ★ 13k
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Charm Error - methp
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