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0
replies
1.5k
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Fragen zu Gviz
Gviz
Gviz
12.8 years ago
florian.hahne@novartis.com
★ 1.6k
0
votes
1
reply
1.1k
views
(minfi) Return value from dmpFinder
GO
GO
updated 12.8 years ago by
Tim Triche
★ 4.2k • written 12.8 years ago by
Subhashree
▴ 10
0
votes
1
reply
4.8k
views
EdgeR vs voom, what to consider when deciding which to use
RNASeq
qPCR
edgeR
RNASeq
qPCR
edgeR
updated 12.8 years ago by
Steve Lianoglou
★ 13k • written 12.8 years ago by
Lucia Peixoto
▴ 330
0
votes
0
replies
1.3k
views
about expression value generated by SCAN UPC package
SCAN.UPC
SCAN.UPC
12.8 years ago
gregory voisin
▴ 430
1
vote
2
replies
3.0k
views
Annotation problem through org.Mm.eg.db
RNASeq
RNASeq
updated 12.8 years ago by
Marc Carlson
★ 7.2k • written 12.8 years ago by
hsharm03@students.poly.edu
▴ 180
0
votes
0
replies
1.8k
views
nsFilter give error saying \"invalid subscripts type \'list\'\"
12.8 years ago
Guest User
★ 13k
0
votes
0
replies
1.5k
views
A question about GWASTools package
cdf
GWASTools
cdf
GWASTools
12.8 years ago
Stephanie M. Gogarten
▴ 890
1
vote
4
replies
2.0k
views
Is GO.db out of date?
Transcription
GO
Transcription
GO
12.8 years ago
chawla
▴ 190
0
votes
14
replies
3.8k
views
BiocGenerics 0.5.6 not loading properly
Rsamtools
BiocGenerics
Rsamtools
BiocGenerics
updated 12.8 years ago by
Dan Tenenbaum
★ 8.2k • written 12.8 years ago by
TriS
▴ 200
0
votes
1
reply
1.8k
views
Unable to install package
updated 12.8 years ago by
Dan Tenenbaum
★ 8.2k • written 12.8 years ago by
Arturo
▴ 10
0
votes
2
replies
1.7k
views
ChIPpeakAnno query
Microarray
Annotation
Cancer
Prostate
annotate
affy
convert
biomaRt
ChIPpeakAnno
Cancer
updated 12.8 years ago by
Luke Selth
▴ 10 • written 12.8 years ago by
Julie Zhu
★ 4.3k
0
votes
10
replies
2.3k
views
Calculate Outer Positions of GappedAlignmentPairs
Coverage
GenomicRanges
Coverage
GenomicRanges
updated 12.8 years ago by
Michael Lawrence
★ 11k • written 12.8 years ago by
Dario Strbenac
★ 1.6k
0
votes
0
replies
1.6k
views
xzfile() cannot open the connection, lzma encoder error 5.
Biophysics
Biophysics
12.8 years ago
Wang Ming
▴ 20
0
votes
1
reply
1.7k
views
xzfile() cannot open the connection, lzma encoder error 5.
Biophysics
Biophysics
updated 12.8 years ago by
Guangchuang Yu
★ 1.2k • written 12.8 years ago by
Wang Ming
▴ 20
0
votes
1
reply
2.4k
views
how to get the exon count by using htseq-count
updated 12.8 years ago by
Simon Anders
★ 3.8k • written 12.8 years ago by
Guest User
★ 13k
0
votes
3
replies
2.3k
views
edgeR Quasi-likelihood with tagwise dispersion?
edgeR
edgeR
updated 12.8 years ago by
Gordon Smyth
53k • written 12.8 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
7
replies
2.3k
views
error with retrieving dn and ds using biomart
biomaRt
biomaRt
updated 12.8 years ago by
James W. MacDonald
68k • written 12.8 years ago by
lemon tree
▴ 40
0
votes
0
replies
865
views
Error in .testGOFra� me(x, organism)
GO
BiocInstaller
GO
BiocInstaller
12.8 years ago
Guest User
★ 13k
0
votes
3
replies
939
views
issue when doing program.
updated 12.8 years ago by
James W. MacDonald
68k • written 12.8 years ago by
Laya Rose
▴ 20
0
votes
1
reply
1.2k
views
Error in .testGOFrame(x, organism)
GO
Organism
rat2302
AnnotationDbi
GO
Organism
rat2302
AnnotationDbi
updated 12.8 years ago by
Valerie Obenchain
★ 6.8k • written 12.8 years ago by
Guest User
★ 13k
0
votes
1
reply
1.9k
views
some problems of easyRNASeq� : about the gtf files
Annotation
easyRNASeq
Annotation
easyRNASeq
updated 12.8 years ago by
delhomme@embl.de
★ 1.2k • written 12.8 years ago by
Guest User
★ 13k
0
votes
1
reply
1.1k
views
Unable to install package \"CAGEr\" - Warning message: package � CAGEr� is not available (for R version 2.15.3)
updated 12.8 years ago by
Dan Tenenbaum
★ 8.2k • written 12.8 years ago by
Guest User
★ 13k
0
votes
0
replies
1.3k
views
how to use color to represent significant changed genes in maPlot of edgeR
ASSIGN
ASSIGN
12.8 years ago
wang peter
★ 2.0k
0
votes
10
replies
3.2k
views
assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray
Annotation
GO
Network
Regression
Survival
Infrastructure
Escherichia coli
ROC
12.8 years ago
Julie Zhu
★ 4.3k
0
votes
6
replies
1.5k
views
Distance btw sequences from different sets
updated 12.8 years ago by
Hervé Pagès
16k • written 12.8 years ago by
Benilton Carvalho
★ 4.3k
0
votes
0
replies
849
views
problem extracting non AFE data with Agi4x44PreProcessing package
12.8 years ago
Bernal-Mizrachi, Leon
▴ 50
0
votes
3
replies
1.3k
views
Proper use of annotation package
Annotation
probe
Annotation
probe
12.8 years ago
Kamila Naxerova
▴ 100
0
votes
1
reply
620
views
limma interaction model example
limma
limma
updated 12.8 years ago by
James W. MacDonald
68k • written 12.8 years ago by
Guest User
★ 13k
0
votes
0
replies
1.2k
views
I was wondering if anyone here was using SPP?
Sequencing
Sequencing
12.8 years ago
Matthew Thornton
▴ 390
2
votes
0
replies
1.5k
views
Fix for queryAE() in the ArrayExpress package
ArrayExpress
ArrayExpress
12.8 years ago
Ibrahim Emam
▴ 50
0
votes
5
replies
2.3k
views
edgeR for data combined from different studies and/or platforms
Sequencing
Cancer
edgeR
Sequencing
Cancer
edgeR
updated 12.8 years ago by
Ryan C. Thompson
★ 7.9k • written 12.8 years ago by
Guest User
★ 13k
0
votes
0
replies
742
views
Question about limma pacakge
limma
limma
12.8 years ago
Marie DENIS
▴ 10
0
votes
2
replies
2.9k
views
MT reference differences between hg19/GRCH37
BSgenome
BSgenome
BSgenome
BSgenome
12.8 years ago
Julian Gehring
★ 1.3k
0
votes
0
replies
1.1k
views
NCI 60 gene expression status
Cancer
Cancer
12.8 years ago
Alyaa Mahmoud
▴ 440
0
votes
0
replies
1.4k
views
Analysis inquiry for Affymetrix Human Exon ST1.0 array
Annotation
Normalization
biomaRt
Annotation
Normalization
biomaRt
12.8 years ago
Jeremy Ng
▴ 180
0
votes
1
reply
1.2k
views
DESeq pairwise comparisons between conditions within a multi-factor design
DESeq
DESeq
updated 12.8 years ago by
Simon Anders
★ 3.8k • written 12.8 years ago by
Andrew Lysaght
▴ 10
0
votes
2
replies
1.6k
views
R crashes when calling readCelFile in Starr package
updated 12.8 years ago by
Henrik Bengtsson
★ 2.4k • written 12.8 years ago by
Koh, Fong Ming
▴ 20
0
votes
2
replies
1.8k
views
Difference between EdgeR and DeSeq in library normalization
RNASeq
Normalization
edgeR
DESeq
RNASeq
Normalization
edgeR
DESeq
updated 12.8 years ago by
Simon Anders
★ 3.8k • written 12.8 years ago by
Lucia Peixoto
▴ 330
0
votes
3
replies
1.9k
views
Gene symbol update.
updated 12.8 years ago by
Marc Carlson
★ 7.2k • written 12.8 years ago by
Jinyan Huang
▴ 110
0
votes
1
reply
1.7k
views
makeTranscriptDbFromBiomart - chrominfo failure
TranscriptDb
GenomicFeatures
TranscriptDb
GenomicFeatures
updated 12.8 years ago by
Marc Carlson
★ 7.2k • written 12.8 years ago by
Stefanie
▴ 360
0
votes
0
replies
1.5k
views
MCS & ChemineR
Network
Clustering
PROcess
ChemmineR
Network
Clustering
PROcess
ChemmineR
12.8 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
991
views
BioC2013, July 18-19 (Developer Day July 17), Seattle: Registration Open
Cancer
Cancer
12.8 years ago
Martin Morgan
25k
0
votes
0
replies
1.2k
views
ctc::hc2Newick branch length errors?
ctc
ctc
12.8 years ago
Narayanan, Manikandan NIH/NIAID [E]
▴ 60
0
votes
1
reply
1.7k
views
edgeR Warings
edgeR
edgeR
updated 12.8 years ago by
Mark Robinson
▴ 880 • written 12.8 years ago by
Guest User
★ 13k
0
votes
0
replies
1.5k
views
[Solved] GRanges error - Error: identical(colnames(classinfo), colnames(out)) is not TRUE
GenomicRanges
GenomicRanges
12.8 years ago
Richard Birnie
▴ 10
0
votes
0
replies
1.3k
views
DEXseq: transcript plot
annotate
annotate
12.8 years ago
Vincenzo Capece
▴ 140
0
votes
5
replies
2.7k
views
yieldSize and paired end data in SummarizeOverlaps error?
BSgenome
PROcess
BSgenome
ASSIGN
BSgenome
PROcess
BSgenome
ASSIGN
updated 12.8 years ago by
Valerie Obenchain
★ 6.8k • written 12.8 years ago by
Thomas Whisenant
▴ 10
0
votes
0
replies
1.1k
views
Illumina Human 6 V1 expression annotation file
Annotation
Annotation
12.8 years ago
Jinyan Huang
▴ 110
0
votes
1
reply
917
views
Why Gene Set Enrichment results of two data set of the same disease are very different?
Microarray
Microarray
updated 12.8 years ago by
Sean Davis
21k • written 12.8 years ago by
Feng Tian
▴ 110
0
votes
1
reply
1.7k
views
Segfault in MEDIPS MEDIPS.methylProfiling() with ROI file
Preprocessing
BSgenome
biomaRt
BSgenome
GenomicRanges
MEDIPS
Preprocessing
BSgenome
MEDIPS
updated 12.8 years ago by
Lukas Chavez
▴ 570 • written 12.8 years ago by
Stephen Turner
▴ 290
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Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
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53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
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Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
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Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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