0
votes
0
replies
1.5k
views
Fragen zu Gviz
Gviz Gviz
12.8 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
1
reply
1.1k
views
(minfi) Return value from dmpFinder
GO GO
updated 12.8 years ago by ★ 4.2k • written 12.8 years ago by ▴ 10
0
votes
1
reply
4.8k
views
EdgeR vs voom, what to consider when deciding which to use
RNASeq qPCR edgeR RNASeq qPCR edgeR
updated 12.8 years ago by ★ 13k • written 12.8 years ago by ▴ 330
0
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about expression value generated by SCAN UPC package
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12.8 years ago gregory voisin ▴ 430
1
vote
2
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Annotation problem through org.Mm.eg.db
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updated 12.8 years ago by ★ 7.2k • written 12.8 years ago by ▴ 180
0
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0
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nsFilter give error saying \"invalid subscripts type \'list\'\"
12.8 years ago Guest User ★ 13k
0
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0
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1.5k
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A question about GWASTools package
cdf GWASTools cdf GWASTools
12.8 years ago Stephanie M. Gogarten ▴ 890
1
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4
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Is GO.db out of date?
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12.8 years ago chawla ▴ 190
0
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14
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BiocGenerics 0.5.6 not loading properly
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updated 12.8 years ago by ★ 8.2k • written 12.8 years ago by ▴ 200
0
votes
1
reply
1.8k
views
Unable to install package
updated 12.8 years ago by ★ 8.2k • written 12.8 years ago by ▴ 10
0
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2
replies
1.7k
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ChIPpeakAnno query
Microarray Annotation Cancer Prostate annotate affy convert biomaRt ChIPpeakAnno Cancer
updated 12.8 years ago by ▴ 10 • written 12.8 years ago by ★ 4.3k
0
votes
10
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2.3k
views
Calculate Outer Positions of GappedAlignmentPairs
Coverage GenomicRanges Coverage GenomicRanges
updated 12.8 years ago by ★ 11k • written 12.8 years ago by ★ 1.6k
0
votes
0
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1.6k
views
xzfile() cannot open the connection, lzma encoder error 5.
Biophysics Biophysics
12.8 years ago Wang Ming ▴ 20
0
votes
1
reply
1.7k
views
xzfile() cannot open the connection, lzma encoder error 5.
Biophysics Biophysics
updated 12.8 years ago by ★ 1.2k • written 12.8 years ago by ▴ 20
0
votes
1
reply
2.4k
views
how to get the exon count by using htseq-count
updated 12.8 years ago by ★ 3.8k • written 12.8 years ago by ★ 13k
0
votes
3
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2.3k
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edgeR Quasi-likelihood with tagwise dispersion?
edgeR edgeR
updated 12.8 years ago by 53k • written 12.8 years ago by ★ 7.9k
0
votes
7
replies
2.3k
views
error with retrieving dn and ds using biomart
biomaRt biomaRt
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 40
0
votes
0
replies
865
views
Error in .testGOFra� me(x, organism)
GO BiocInstaller GO BiocInstaller
12.8 years ago Guest User ★ 13k
0
votes
3
replies
939
views
issue when doing program.
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 20
0
votes
1
reply
1.2k
views
Error in .testGOFrame(x, organism)
GO Organism rat2302 AnnotationDbi GO Organism rat2302 AnnotationDbi
updated 12.8 years ago by ★ 6.8k • written 12.8 years ago by ★ 13k
0
votes
1
reply
1.9k
views
some problems of easyRNASeq� : about the gtf files
Annotation easyRNASeq Annotation easyRNASeq
updated 12.8 years ago by ★ 1.2k • written 12.8 years ago by ★ 13k
0
votes
1
reply
1.1k
views
Unable to install package \"CAGEr\" - Warning message: package � CAGEr� is not available (for R version 2.15.3)
updated 12.8 years ago by ★ 8.2k • written 12.8 years ago by ★ 13k
0
votes
0
replies
1.3k
views
how to use color to represent significant changed genes in maPlot of edgeR
ASSIGN ASSIGN
12.8 years ago wang peter ★ 2.0k
0
votes
10
replies
3.2k
views
assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray Annotation GO Network Regression Survival Infrastructure Escherichia coli ROC
12.8 years ago Julie Zhu ★ 4.3k
0
votes
6
replies
1.5k
views
Distance btw sequences from different sets
updated 12.8 years ago by 16k • written 12.8 years ago by ★ 4.3k
0
votes
0
replies
849
views
problem extracting non AFE data with Agi4x44PreProcessing package
12.8 years ago Bernal-Mizrachi, Leon ▴ 50
0
votes
3
replies
1.3k
views
Proper use of annotation package
Annotation probe Annotation probe
12.8 years ago Kamila Naxerova ▴ 100
0
votes
1
reply
620
views
limma interaction model example
limma limma
updated 12.8 years ago by 68k • written 12.8 years ago by ★ 13k
0
votes
0
replies
1.2k
views
I was wondering if anyone here was using SPP?
Sequencing Sequencing
12.8 years ago Matthew Thornton ▴ 390
2
votes
0
replies
1.5k
views
Fix for queryAE() in the ArrayExpress package
ArrayExpress ArrayExpress
12.8 years ago Ibrahim Emam ▴ 50
0
votes
5
replies
2.3k
views
edgeR for data combined from different studies and/or platforms
Sequencing Cancer edgeR Sequencing Cancer edgeR
updated 12.8 years ago by ★ 7.9k • written 12.8 years ago by ★ 13k
0
votes
0
replies
742
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Question about limma pacakge
limma limma
12.8 years ago Marie DENIS ▴ 10
0
votes
2
replies
2.9k
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MT reference differences between hg19/GRCH37
BSgenome BSgenome BSgenome BSgenome
12.8 years ago Julian Gehring ★ 1.3k
0
votes
0
replies
1.1k
views
NCI 60 gene expression status
Cancer Cancer
12.8 years ago Alyaa Mahmoud ▴ 440
0
votes
0
replies
1.4k
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Analysis inquiry for Affymetrix Human Exon ST1.0 array
Annotation Normalization biomaRt Annotation Normalization biomaRt
12.8 years ago Jeremy Ng ▴ 180
0
votes
1
reply
1.2k
views
DESeq pairwise comparisons between conditions within a multi-factor design
DESeq DESeq
updated 12.8 years ago by ★ 3.8k • written 12.8 years ago by ▴ 10
0
votes
2
replies
1.6k
views
R crashes when calling readCelFile in Starr package
updated 12.8 years ago by ★ 2.4k • written 12.8 years ago by ▴ 20
0
votes
2
replies
1.8k
views
Difference between EdgeR and DeSeq in library normalization
RNASeq Normalization edgeR DESeq RNASeq Normalization edgeR DESeq
updated 12.8 years ago by ★ 3.8k • written 12.8 years ago by ▴ 330
0
votes
3
replies
1.9k
views
Gene symbol update.
updated 12.8 years ago by ★ 7.2k • written 12.8 years ago by ▴ 110
0
votes
1
reply
1.7k
views
makeTranscriptDbFromBiomart - chrominfo failure
TranscriptDb GenomicFeatures TranscriptDb GenomicFeatures
updated 12.8 years ago by ★ 7.2k • written 12.8 years ago by ▴ 360
0
votes
0
replies
1.5k
views
MCS & ChemineR
Network Clustering PROcess ChemmineR Network Clustering PROcess ChemmineR
12.8 years ago Thomas Girke ★ 1.7k
0
votes
0
replies
991
views
BioC2013, July 18-19 (Developer Day July 17), Seattle: Registration Open
Cancer Cancer
12.8 years ago Martin Morgan 25k
0
votes
0
replies
1.2k
views
ctc::hc2Newick branch length errors?
ctc ctc
12.8 years ago Narayanan, Manikandan NIH/NIAID [E] ▴ 60
0
votes
1
reply
1.7k
views
edgeR Warings
edgeR edgeR
updated 12.8 years ago by ▴ 880 • written 12.8 years ago by ★ 13k
0
votes
0
replies
1.5k
views
[Solved] GRanges error - Error: identical(colnames(classinfo), colnames(out)) is not TRUE
GenomicRanges GenomicRanges
12.8 years ago Richard Birnie ▴ 10
0
votes
0
replies
1.3k
views
DEXseq: transcript plot
annotate annotate
12.8 years ago Vincenzo Capece ▴ 140
0
votes
5
replies
2.7k
views
yieldSize and paired end data in SummarizeOverlaps error?
BSgenome PROcess BSgenome ASSIGN BSgenome PROcess BSgenome ASSIGN
updated 12.8 years ago by ★ 6.8k • written 12.8 years ago by ▴ 10
0
votes
0
replies
1.1k
views
Illumina Human 6 V1 expression annotation file
Annotation Annotation
12.8 years ago Jinyan Huang ▴ 110
0
votes
1
reply
917
views
Why Gene Set Enrichment results of two data set of the same disease are very different?
Microarray Microarray
updated 12.8 years ago by 21k • written 12.8 years ago by ▴ 110
0
votes
1
reply
1.7k
views
Segfault in MEDIPS MEDIPS.methylProfiling() with ROI file
Preprocessing BSgenome biomaRt BSgenome GenomicRanges MEDIPS Preprocessing BSgenome MEDIPS
updated 12.8 years ago by ▴ 570 • written 12.8 years ago by ▴ 290
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