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0
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1.1k
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error in plotKEGGGraph
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15.3 years ago Robert M. Flight ▴ 280
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caught segfault in arrayQualityMetrics
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crlmm package and allele-specific CNV with Illumina SNP arrays
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updated 15.3 years ago by ▴ 250 • written 15.3 years ago by ▴ 20
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Installing Bioconductor on Linux...
updated 15.3 years ago by 25k • written 15.3 years ago by ▴ 150
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Rif: Limma: nestedF and interaction term
15.3 years ago MassimoAcquaviva@ospedale-gaslini.ge.it ▴ 40
0
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AgiMicroRna problems
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Rsamtools Memory Issue
updated 15.3 years ago by 25k • written 15.3 years ago by ▴ 260
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Unambiguously mapping of affy IDs to gene symbols using hgu133plus2.db
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RdbiPgSQL installation trouble
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updated 15.3 years ago by 25k • written 15.3 years ago by ▴ 40
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Help Handling potential siRNA off target effects
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updated 15.3 years ago by ★ 13k • written 15.3 years ago by ▴ 20
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Several faculty positions in Statistics and Bioinformatics at Penn State
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Problem with genomicFeatures: id2name
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Limma: nestedF and interaction term
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updated 15.3 years ago by 68k • written 15.3 years ago by ▴ 40
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yet another gene universe question
15.3 years ago Max Kuhn ▴ 60
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Biostrings pdf, missing? 'Efficient genome searching with Biostrings and the BSgenome data package'
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updated 15.3 years ago by ★ 8.2k • written 15.3 years ago by ★ 1.1k
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Illumina Methylation data
updated 15.3 years ago by ★ 4.2k • written 15.3 years ago by ▴ 50
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how to save the expression values for two color data after normalization
15.3 years ago Budhayash Gautam ▴ 90
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Bug in G/IRanges when slicing with an Rle containing only 1 runLength/value
Cancer Cancer
updated 15.3 years ago by 25k • written 15.3 years ago by ★ 13k
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how to give input to geneAnswer
updated 15.3 years ago by ★ 13k • written 15.3 years ago by ▴ 90
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exonmap/xmapcore and splicing.index
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updated 15.3 years ago by ▴ 190 • written 15.3 years ago by ▴ 70
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AgiMicroRna problems
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15.3 years ago Mark Cowley ▴ 910
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reading data from Beadarray into R
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how to save the expression values for two color data after normalization
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15.3 years ago boczniak767 ▴ 740
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Feedback on Affymetrix background adjustment
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Simpleaffy problems
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updated 15.3 years ago by 68k • written 15.3 years ago by ▴ 110
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updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 40
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Question: How does limma derives its logFC value in two colored arrays?
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updated 15.3 years ago by ▴ 350 • written 15.3 years ago by 53k
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Right skewed histogram of p-values
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updated 15.3 years ago by ★ 3.8k • written 15.3 years ago by ▴ 540
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install error in GeneRfold
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updated 15.3 years ago by ★ 2.0k • written 15.3 years ago by ▴ 250
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updated 15.3 years ago by 68k • written 15.3 years ago by ▴ 350
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updated 15.3 years ago by ▴ 450 • written 15.3 years ago by ▴ 250
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updated 15.3 years ago by ▴ 350 • written 15.3 years ago by ▴ 230
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15.3 years ago Neel Aluru ▴ 460
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Help on extracting up-regulated genes with limma‏
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updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 10
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Question about topTable
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updated 15.3 years ago by ▴ 910 • written 15.3 years ago by ▴ 140
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Question: How does limma derives its logFC value in two colored arrays?
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15.3 years ago Sunny Srivastava ▴ 350
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PlateCore questions
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updated 15.3 years ago by ▴ 40 • written 15.3 years ago by ▴ 80
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unbalanced block design using limma
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15.3 years ago Gordon Smyth 53k
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goTools question
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15.3 years ago Pete Shepard ▴ 240
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BioNet - interpretation of node score (Eva Benito Garagorri)
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15.3 years ago Daniela Beißer ▴ 20
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Puzzled about limma and PAM results validity
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15.3 years ago Giulio Di Giovanni ▴ 540
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4
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ShortRead for sequencing data quality assessment
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snpMatrix: read.plink() allocMatrix: too many elements specified
updated 15.3 years ago by ★ 4.3k • written 15.3 years ago by ▴ 10
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Package "xps" "import.expr.scheme" problem
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updated 15.3 years ago by ★ 3.9k • written 15.3 years ago by ▴ 80
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unbalanced block design using limma
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15.3 years ago julin@aecom.yu.edu ▴ 80
46,719 results • Page 656 of 935
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Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k
Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…
Comment: Error in creating BSGenome package by Nguyen • 0
I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…
Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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