0
votes
2
replies
1.7k
views
problem of cMAP package
Pathways Pathways
updated 16.7 years ago by ★ 5.5k • written 16.7 years ago by ▴ 10
0
votes
1
reply
1.0k
views
filtered Exon Arrays: Core vs Extended Dataset
limma limma
updated 16.7 years ago by ★ 1.1k • written 16.7 years ago by ★ 1.3k
0
votes
3
replies
1.5k
views
read.targets() in the Agi4x44PreProcess package
Agi4x44PreProcess Agi4x44PreProcess
updated 16.7 years ago by ▴ 120 • written 16.7 years ago by ▴ 390
0
votes
1
reply
1.1k
views
Correlating all pairs of genes in a gene expression matrix?
Clustering Clustering
updated 16.7 years ago by ★ 1.7k • written 16.7 years ago by ▴ 40
0
votes
1
reply
1.2k
views
Agilent 2 colour spike-in controls
updated 16.7 years ago by ★ 6.0k • written 16.7 years ago by ▴ 210
0
votes
1
reply
940
views
Warning in compute.affinities.local()
updated 16.7 years ago by ★ 2.3k • written 16.7 years ago by ▴ 20
0
votes
0
replies
554
views
[Bioc] Is Nimblegen Training worth it?
PROcess PROcess
16.7 years ago Thomas Hampton ▴ 750
0
votes
0
replies
689
views
[Fwd: [Fwd: loading SPOT file]]
16.7 years ago Barbara Cegielska ▴ 200
1
vote
3
replies
1.8k
views
how often are annotation packages updated (with respect to hgu133a.db and hgu133plus2.db)
Annotation hgu133a hgu133plus2 probe Annotation hgu133a hgu133plus2 probe
updated 16.7 years ago by ★ 6.5k • written 16.7 years ago by ▴ 350
0
votes
3
replies
1.5k
views
smida won't load in R 2.9
updated 16.7 years ago by ▴ 810 • written 16.7 years ago by ▴ 10
0
votes
1
reply
1.2k
views
'RG' looks like a pre-2.4.0 S4 object: please recreate it
updated 16.7 years ago by 6.7k • written 16.7 years ago by ▴ 200
0
votes
3
replies
1.3k
views
KEGGHyperGParams variable "mouse4302PATH2EG" was not found
Annotation GO hgu133plus2 moe430b mouse4302 Annotation GO hgu133plus2 moe430b mouse4302
updated 16.7 years ago by ★ 7.2k • written 16.7 years ago by ▴ 170
0
votes
0
replies
1.1k
views
GenomeGraphs 1.4.0 fails to plot empty GeneRegion
GenomeGraphs GenomeGraphs
16.7 years ago Tim Rayner ▴ 270
0
votes
1
reply
1.0k
views
gcrma and unable to access brainarray.mbni.med.umich.edu...
GO gcrma GO gcrma
updated 16.7 years ago by 68k • written 16.7 years ago by ★ 1.0k
0
votes
0
replies
899
views
Statistics position at Roche, Basel
16.7 years ago Steiner, Guido ▴ 60
0
votes
2
replies
1.1k
views
random positioning of duplicate spots
GO limma GO limma
updated 16.7 years ago by ▴ 100 • written 16.7 years ago by ▴ 90
0
votes
0
replies
1.1k
views
analyze/import my normalized/summarized affy data in affylmGUI
cdf affylmGUI cdf affylmGUI
16.7 years ago shirley zhang ★ 1.0k
0
votes
3
replies
1.7k
views
flowClust results in subset filters
Cancer flowCore flowClust Cancer flowCore flowClust
updated 16.7 years ago by ▴ 50 • written 16.7 years ago by ▴ 540
0
votes
3
replies
1.4k
views
Rgraphviz: .onLoad error
Rgraphviz Rgraphviz
updated 16.7 years ago by ★ 6.5k • written 16.7 years ago by ▴ 20
0
votes
2
replies
2.2k
views
flowClust installation on OS X
flowClust flowClust
updated 16.7 years ago by ★ 1.6k • written 16.7 years ago by ▴ 30
0
votes
0
replies
991
views
KEGGSOAP install problem
Cancer KEGGSOAP Cancer KEGGSOAP
16.7 years ago Daniel Brewer ★ 1.9k
0
votes
1
reply
1.1k
views
Showing two datasets in the same plot
graph graph
updated 16.7 years ago by ★ 2.3k • written 16.7 years ago by ▴ 100
0
votes
7
replies
2.3k
views
KEGG: gene ids for nodes in a pathway
16.7 years ago Tim Smith ★ 1.1k
0
votes
0
replies
838
views
how to avoid outliers
16.7 years ago John Antonydas Gaspar ▴ 130
0
votes
0
replies
1.3k
views
Yet another nested design in limma
affy limma siggenes factDesign maanova affy limma siggenes factDesign maanova
16.7 years ago Paolo Innocenti ▴ 320
0
votes
2
replies
1.1k
views
P-values returned from siggenes's sam() function
updated 16.7 years ago by ▴ 320 • written 16.7 years ago by ▴ 900
0
votes
0
replies
1.7k
views
mget() error with NA values
Microarray Annotation hgu133plus2 hgu95av2 AnnotationDbi Microarray Annotation hgu133plus2
16.7 years ago James W. MacDonald 68k
0
votes
0
replies
992
views
error in runBioHMM() (package snapCGH)
CGH snapCGH CGH snapCGH
16.7 years ago Wolfgang Raffelsberger ▴ 160
0
votes
3
replies
1.2k
views
demo code for R package
updated 16.7 years ago by ★ 1.6k • written 16.7 years ago by ★ 1.0k
0
votes
1
reply
3.3k
views
zooming in a cluster tree
updated 16.7 years ago by ★ 1.7k • written 16.7 years ago by ▴ 70
0
votes
6
replies
1.4k
views
(no subject)
updated 16.7 years ago by ▴ 10 • written 16.7 years ago by ★ 6.5k
0
votes
0
replies
1.1k
views
RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
Cancer RdbiPgSQL safe Cancer RdbiPgSQL safe
16.7 years ago Ben Madin ▴ 20
0
votes
3
replies
1.4k
views
extracting specific columns from a table
updated 16.7 years ago by ▴ 400 • written 16.7 years ago by ▴ 70
0
votes
3
replies
6.6k
views
multiple ColSideColors-type annotations on a heatmap
Cancer annotate Cancer annotate
updated 16.7 years ago by ▴ 610 • written 16.7 years ago by ★ 1.1k
0
votes
0
replies
471
views
EBImage installation
16.7 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
955
views
Design matrix about a split plot design in Limma
16.7 years ago Hu, Juan ▴ 10
0
votes
0
replies
731
views
Limma and ANOVA with repeated measures
limma limma
16.7 years ago Sharon Anbu ▴ 480
0
votes
6
replies
2.2k
views
installation of Rgraphviz
Rgraphviz SIM Rgraphviz SIM
updated 16.7 years ago by ★ 1.6k • written 16.7 years ago by ▴ 130
0
votes
4
replies
2.0k
views
KEGGGraph: some complexed proteins are orphans in graphNEL
KEGGgraph KEGGgraph
updated 16.7 years ago by ▴ 340 • written 16.7 years ago by ★ 1.1k
0
votes
0
replies
1.2k
views
JoVE: New Video Articles on Biomedical Research Techniques
zebrafish zebrafish
16.7 years ago Moshe Pritsker, Editor, JoVE ▴ 20
0
votes
0
replies
1.1k
views
Bioconductor package to map probe set ids from one chip to another chip
Annotation GO Cancer hgu133a hgu95av2 probe Biostrings Annotation GO Cancer hgu133a
16.7 years ago Hervé Pagès 16k
0
votes
12
replies
2.8k
views
installation of Rgraphviz
Rgraphviz Rgraphviz
16.7 years ago ravi ▴ 130
0
votes
0
replies
2.3k
views
Post Doc position, Berlin Germany
Sequencing Microarray Proteomics Pathways Network Cancer Sequencing Microarray Proteomics
16.7 years ago Paul Hammer ▴ 220
0
votes
0
replies
1.3k
views
Limma and ANOVA with repeated measures
limma limma
16.7 years ago Sharon Anbu ▴ 480
0
votes
0
replies
1.1k
views
P-values returned from siggenes's sam() function
multtest multtest
16.7 years ago Michal Blazejczyk ▴ 320
0
votes
1
reply
1.9k
views
crlmm and Illumina Infinium arrays
crlmm crlmm
updated 16.7 years ago by ▴ 1000 • written 16.7 years ago by ▴ 170
0
votes
7
replies
1.7k
views
(no subject)
updated 16.7 years ago by ▴ 240 • written 16.7 years ago by ▴ 90
0
votes
7
replies
2.8k
views
mget() error with NA values
Microarray Microarray
updated 16.7 years ago by 68k • written 16.7 years ago by ▴ 130
0
votes
0
replies
965
views
limma: analyzing randomized duplicate spots on Nimblegen array
Normalization limma Normalization limma
16.7 years ago Vishal Thapar ▴ 90
0
votes
0
replies
861
views
limma: analyzing randomized duplicate spots on Nimblegen array
Normalization limma Normalization limma
16.7 years ago Jenny Drnevich ★ 2.0k
46,721 results • Page 714 of 935
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Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0
Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
Comment: Questions about bacon QC and correction on EWAS results by sup0903 • 0
This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …
Comment: Ensembl site unresponsive via biomaRt by sebastianenewell • 0
> I think this is an unrelated issue. The original post includes the > message Error: 'curl_parse_url' is not an exported object from > 'na…
Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
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