0
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0
replies
679
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Error with normexp in limma background correction
limma limma
17.4 years ago Gordon Smyth 53k
0
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0
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799
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Error with normexp in limma background correction
17.4 years ago Augusto Rendon ▴ 10
0
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0
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764
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makePdInfoPackage failure
affy affy
17.4 years ago Arkady ▴ 60
0
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1
reply
473
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Using probes2table without affy probeset IDs
affy affy
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 10
0
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1
reply
1.1k
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BiomaRt annotation for the affy6.0 snps
Annotation affy biomaRt Annotation affy biomaRt
updated 17.4 years ago by ▴ 40 • written 17.4 years ago by ▴ 320
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1
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1.2k
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black lokal lädt dich zu den lokalisten ein.
17.5 years ago • updated 17.4 years ago friends@lokalisten.de ▴ 30
0
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0
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limma warning: Estimation of var.prior failed
GO limma GO limma
17.4 years ago Georg Otto ▴ 510
0
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2
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1.8k
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ReadAffy crashes on mac
Preprocessing affy convert affxparser affyio BUS Preprocessing affy convert affxparser
updated 17.4 years ago by ★ 1.2k • written 17.4 years ago by ▴ 40
0
votes
1
reply
1.4k
views
Analysis tips for two-color oligo arrays with common reference and dye swap
Microarray Normalization Microarray Normalization
updated 17.4 years ago by ▴ 970 • written 17.4 years ago by ▴ 10
0
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0
replies
797
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Can't access biomaRt with mysql
biomaRt biomaRt
17.4 years ago Richard Pearson ▴ 390
0
votes
0
replies
948
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limma design and biolrep matrix, duplicateCorrelation
17.4 years ago Glyn Bradley ▴ 40
0
votes
1
reply
942
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Marts downloads
updated 17.4 years ago by ▴ 600 • written 17.4 years ago by ▴ 120
0
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2
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1.2k
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GenomeGraphs
updated 17.4 years ago by ▴ 600 • written 17.4 years ago by ▴ 120
0
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1
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1.5k
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library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
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updated 17.4 years ago by ★ 5.5k • written 17.4 years ago by ▴ 200
0
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0
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1.4k
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DNAcopy segments.p function / Scoring CNVs
affy DNAcopy affy DNAcopy
17.4 years ago marco zucchelli ▴ 320
0
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4
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1.7k
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difference between rmaPLM and default fitPLM?
GO GO
17.4 years ago Jenny Drnevich ★ 2.0k
0
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0
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1.3k
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Limma-design matrix for technical replication
Microarray Genetics oligo Microarray Genetics oligo
17.4 years ago Gordon Smyth 53k
0
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1
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1.0k
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BioC2008 Talks and Lab Materials?
Alignment GO Biostrings Alignment GO Biostrings
updated 17.4 years ago by ▴ 540 • written 17.4 years ago by ★ 2.0k
0
votes
1
reply
1.1k
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limits/thresholds for arrayWeights in the limma package
Genetics limma Genetics limma
updated 17.4 years ago by ▴ 460 • written 17.4 years ago by ▴ 30
0
votes
1
reply
881
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RegGrn - illumina metrics file
updated 17.4 years ago by ★ 3.6k • written 17.4 years ago by ▴ 320
0
votes
1
reply
825
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KEGG annotations for worm (c. elegans)
Annotation Annotation
updated 17.4 years ago by ★ 7.2k • written 17.4 years ago by ▴ 10
0
votes
1
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1.1k
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gcrma problem
cdf affy makecdfenv gcrma cdf affy makecdfenv gcrma
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 40
0
votes
4
replies
1.8k
views
Quality control;Missing value;installation
Cancer cdf affy affyQCReport affyio arrayQualityMetrics Cancer cdf affy affyQCReport
updated 17.4 years ago by ★ 5.5k • written 17.4 years ago by ▴ 200
0
votes
16
replies
2.8k
views
missing value
cdf affy affyQCReport cdf affy affyQCReport
updated 17.4 years ago by 16k • written 17.4 years ago by ▴ 200
0
votes
4
replies
1.5k
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(no subject)
Genetics Genetics
updated 17.4 years ago by 21k • written 17.4 years ago by ▴ 60
0
votes
0
replies
889
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3 Courses*** R/Splus Fundamentals and Programming Techniques: September 2008 at 3 locations by XLSolutions Corp
17.4 years ago sue@xlsolutions-corp.com ▴ 570
0
votes
1
reply
1.6k
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Limma-design matrix for technical replication
Genetics oligo Genetics oligo
updated 17.4 years ago by ★ 2.0k • written 17.4 years ago by ▴ 10
0
votes
0
replies
928
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Link to picture: Comparison of diff. t-statistics, Limma and rowttests
hgu133plus2 affy limma gcrma hgu133plus2 affy limma gcrma
17.4 years ago Boel Brynedal ▴ 200
0
votes
2
replies
2.7k
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problem with tkrplot installation
limmaGUI limmaGUI
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 20
0
votes
0
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1.2k
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question about pamr.listgenes ....
pamr pamr
17.4 years ago ALok ▴ 170
0
votes
0
replies
898
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LIMMA - within and between array technical replicates
17.4 years ago Dries Knapen ▴ 10
0
votes
1
reply
896
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cdf file
cdf cdf
updated 17.4 years ago by ★ 1.1k • written 17.4 years ago by ▴ 10
0
votes
0
replies
831
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Extracting Intensities from LIMMA with Reference Design
Microarray Clustering Microarray Clustering
17.4 years ago Lin Huffman ▴ 20
0
votes
0
replies
754
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pd.hg18.60mer.expr_1.1.1 and Nimblegen data for oligo
17.4 years ago Bramoulle Alexandre ▴ 10
0
votes
2
replies
758
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preparing packages for use with R and Bioconductor
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 50
0
votes
3
replies
1.8k
views
Using biomaRt to check probe locations
Annotation hgu133plus2 probe biomaRt Annotation hgu133plus2 probe biomaRt
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 100
0
votes
1
reply
575
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same value in an affy exprset
hgu133plus2 gcrma hgu133plus2 gcrma
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 10
0
votes
4
replies
1.5k
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RMA on a batch with NA values
probe probe
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 570
0
votes
1
reply
1.2k
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ABPkgBuilder question
Organism AnnBuilder Organism AnnBuilder
updated 17.4 years ago by ★ 7.2k • written 17.4 years ago by ▴ 40
0
votes
1
reply
2.9k
views
topTable; fold-change and data extraction
Microarray GO probe Microarray GO probe
updated 17.4 years ago by ▴ 750 • written 17.4 years ago by ▴ 40
0
votes
1
reply
919
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how to fastest go from Affymetrix HGU-133 Plus 2.0 chip tiff files to cel files?
probe probe
updated 17.4 years ago by ★ 2.4k • written 17.4 years ago by ▴ 270
0
votes
0
replies
744
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Comprehensive Healthcare List
Coverage Coverage
17.4 years ago pundit ▴ 10
0
votes
2
replies
968
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drinks anyone?
17.4 years ago Gordon Smyth 53k
0
votes
0
replies
604
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Use of bioinformatics meeting room (fwd)
17.4 years ago Gordon Smyth 53k
0
votes
1
reply
1.2k
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Problem in using "rtracklayer' package
updated 17.4 years ago by ▴ 620 • written 17.4 years ago by ▴ 450
0
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0
replies
2.3k
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Problems installing bioconductor on ubuntu
GO GO
17.4 years ago Rebecca Griffiths ▴ 20
0
votes
0
replies
1.1k
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QC report
cdf affy affyQCReport cdf affy affyQCReport
17.4 years ago Yisong Zhen ▴ 10
0
votes
6
replies
3.0k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI limmaGUI affylmGUI limmaGUI
updated 17.4 years ago by ▴ 10 • written 17.5 years ago by ▴ 50
0
votes
0
replies
792
views
odd results with pvclust
GO GO
17.4 years ago asl@tmail.lanl.gov ▴ 10
0
votes
2
replies
1.2k
views
pairwise.comparison invalid object for slot "pData"
GO GO
updated 17.4 years ago by ★ 1.1k • written 17.4 years ago by ▴ 190
46,712 results • Page 742 of 935
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Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
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The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
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Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
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Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
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Answer: Incosistencies in buildSNNGraph() function
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