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Error with CDF environment when using combineAffyBatch of package matchprobes
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19.9 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
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Error with CDF environment when using combineAffyBatch of package matchprobes
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19.9 years ago Hershel Safer ▴ 60
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19.9 years ago pingzhao Hu ▴ 210
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19.9 years ago Eskeatnaf, M.A. ▴ 10
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19.9 years ago Eric Blanc ▴ 30
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19.9 years ago michael watson IAH-C ★ 3.4k
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19.9 years ago Xiao Shi ▴ 90
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19.9 years ago Yanqin Yang ▴ 250
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19.9 years ago Ettinger, Nicholas ▴ 110
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updated 19.9 years ago by ▴ 30 • written 19.9 years ago by 68k
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19.9 years ago Birgit Hauer ▴ 30
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19.9 years ago michael watson IAH-C ★ 3.4k
46,725 results • Page 831 of 935
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice by Gordon Smyth 53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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