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983
views
[JOB] Biostatistics/Analysis
20.4 years ago
Furge, Kyle
▴ 210
0
votes
1
reply
755
views
affy package 'Error in computeExprSet'
updated 20.4 years ago by
Seth Falcon
★ 7.4k • written 20.4 years ago by
Yihuan Xu
▴ 130
0
votes
1
reply
2.1k
views
adjusted p-values for large number of genes...
limma
limma
updated 20.4 years ago by
James W. MacDonald
68k • written 20.4 years ago by
Lourdes Peña Castillo
▴ 140
0
votes
2
replies
1.1k
views
GCRMA, identical normalized values from 3 replicates
affy
gcrma
affy
gcrma
updated 20.4 years ago by
Zhijin Jean Wu
▴ 200 • written 20.4 years ago by
Fangxin Hong
▴ 810
0
votes
1
reply
1.4k
views
finding affy_ID from genesymbol
convert
convert
updated 20.4 years ago by
Steffen Durinck
▴ 420 • written 20.4 years ago by
Andreas Zankl
▴ 80
0
votes
1
reply
883
views
Error in bioClite instructions
updated 20.4 years ago by
Benilton Carvalho
★ 4.3k • written 20.4 years ago by
peter robinson
▴ 300
0
votes
0
replies
528
views
Spurious results with justMAS
20.4 years ago
andrew.w.wooster@gsk.com
▴ 50
0
votes
1
reply
1.3k
views
Mapping CDF from different array platforms
cdf
affy
altcdfenvs
cdf
affy
altcdfenvs
updated 20.4 years ago by
Sean Davis
21k • written 20.4 years ago by
Rifat Hamoudi
▴ 30
0
votes
0
replies
1.1k
views
installing Bioconductor on Mac OS tiger
GUI
GUI
20.4 years ago
Kay Schneitz
▴ 10
0
votes
0
replies
762
views
moe430a and moe430av2 normalisation
20.4 years ago
Margaret Gardiner-Garden
▴ 160
0
votes
1
reply
465
views
error on metadata page
updated 20.4 years ago by
Seth Falcon
★ 7.4k • written 20.4 years ago by
Adam
▴ 40
0
votes
9
replies
2.4k
views
metadata - annotation package changes
Annotation
moe430a
probe
Annotation
moe430a
probe
updated 20.4 years ago by
John Zhang
★ 2.9k • written 20.4 years ago by
MARIA STALTERI
▴ 160
0
votes
2
replies
930
views
adding annotation to exprSet
Annotation
hgu133plus2
annotate
affy
limma
Annotation
hgu133plus2
annotate
affy
limma
20.4 years ago
Andreas Zankl
▴ 80
0
votes
2
replies
868
views
biomaRt question
updated 20.4 years ago by
Steffen Durinck
▴ 420 • written 20.4 years ago by
Jamain, Adrien J
▴ 110
0
votes
2
replies
1.3k
views
Preprocessing affymetrix data
Preprocessing
Preprocessing
updated 20.4 years ago by
wefelmeyer@web.de
▴ 20 • written 20.4 years ago by
Ingunn Berget
▴ 150
0
votes
0
replies
749
views
affycomp, tableAll for dchip, Not multi-array ...
20.4 years ago
Mohammad Esad-Djou
▴ 520
0
votes
0
replies
554
views
getBioC() -- keeps grabbing everything
affy
affy
20.4 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
662
views
loop design question
limma
limma
20.4 years ago
Gordon Smyth
53k
0
votes
0
replies
918
views
Limma using all probes on Affy chip
Normalization
probe
affy
limma
affyPLM
Normalization
probe
affy
limma
affyPLM
20.4 years ago
Gordon Smyth
53k
0
votes
0
replies
652
views
affycomp, Variance across replicates plot,
20.4 years ago
Mohammad Esad-Djou
▴ 520
0
votes
3
replies
1.2k
views
Probe indices for the Drosophila2 Affy chip
drosophila2
probe
drosophila2
probe
updated 20.4 years ago by
James W. MacDonald
68k • written 20.4 years ago by
Eric Blanc
▴ 30
0
votes
2
replies
1.0k
views
loop design question
limma
limma
updated 20.4 years ago by
Ron Ophir
▴ 270 • written 20.4 years ago by
scholz@Ag.arizona.edu
▴ 130
0
votes
1
reply
1.2k
views
Limma using all probes on Affy chip
Normalization
probe
affy
limma
Normalization
probe
affy
limma
updated 20.4 years ago by
Suresh Gopalan
▴ 60 • written 20.4 years ago by
davidl@unr.nevada.edu
▴ 140
0
votes
1
reply
1.1k
views
cdfName/annotation variants for hgu133a?
Annotation
hgu133a
hgu133b
Annotation
hgu133a
hgu133b
updated 20.4 years ago by
James W. MacDonald
68k • written 20.4 years ago by
peter.warren@verizon.net
▴ 40
0
votes
1
reply
724
views
Technical Support Engineer for R/S and Bioconductor
20.4 years ago
sue@xlsolutions-corp.com
▴ 570
0
votes
10
replies
2.8k
views
ABPkgBuilder Error;
20.4 years ago
Barry Henderson
▴ 250
0
votes
2
replies
870
views
limma: positive correlation for dyeswap pairs
20.4 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
764
views
limma Function
limma
limma
20.4 years ago
Jianping Jin
▴ 890
0
votes
0
replies
888
views
image processing -fixed xircle vs. adaptive
20.4 years ago
Sheetal Bhan
▴ 20
0
votes
0
replies
1.1k
views
Job: Computational Biology Group at FHCRC is hiring
Infrastructure
Cancer
PROcess
Infrastructure
Cancer
PROcess
20.4 years ago
Seth Falcon
★ 7.4k
0
votes
2
replies
1.3k
views
affycompPlot
affycomp
affycomp
updated 20.4 years ago by
Zhijin Jean Wu
▴ 200 • written 20.4 years ago by
Mohammad Esad-Djou
▴ 520
0
votes
0
replies
609
views
AffyPLM
20.4 years ago
Caroline Johnston
▴ 70
0
votes
0
replies
791
views
affyPLM query
ChipName
ChipName
20.4 years ago
Caroline Johnston
▴ 70
0
votes
1
reply
801
views
problem with installing Rgraphviz
Rgraphviz
Rgraphviz
updated 20.4 years ago by
Jeff Gentry
★ 3.9k • written 20.4 years ago by
Seth Falcon
★ 7.4k
0
votes
1
reply
974
views
opposite signs in limma
Microarray
limma
Microarray
limma
updated 20.4 years ago by
Gordon Smyth
53k • written 20.4 years ago by
Jihoon Kim
▴ 10
0
votes
1
reply
898
views
BioC problem: cannot install moe430a
moe430a
moe430a
updated 20.4 years ago by
Seth Falcon
★ 7.4k • written 20.4 years ago by
stefano iacus
▴ 430
0
votes
0
replies
834
views
Fwd: limma: positive correlation for dyeswap pairs
20.4 years ago
Naomi Altman
★ 6.0k
0
votes
4
replies
1.2k
views
problem with hgu133a // GOstats // BioC-R2.1.1
updated 20.4 years ago by
John Zhang
★ 2.9k • written 20.4 years ago by
Katleen De Preter
▴ 130
0
votes
3
replies
1.8k
views
LimmaGUI Error
Normalization
GO
limmaGUI
ASSIGN
Normalization
GO
limmaGUI
ASSIGN
20.4 years ago
Brooke-Powell, Elizabeth
▴ 170
0
votes
4
replies
1.4k
views
BlueFuse in limmaGUI [was LimmaGUI Error]
Normalization
GO
limmaGUI
ASSIGN
Normalization
GO
limmaGUI
ASSIGN
updated 20.4 years ago by
Brooke-Powell, Elizabeth
▴ 170 • written 20.4 years ago by
Gordon Smyth
53k
0
votes
1
reply
866
views
normalizing incomplete arrays [was: limma errormessage]
Normalization
limma
convert
Normalization
limma
convert
updated 20.4 years ago by
Jianping Jin
▴ 890 • written 20.4 years ago by
Marcus Davy
▴ 680
0
votes
0
replies
719
views
normalizing incomplete arrays [was: limma error message]
Normalization
limma
Normalization
limma
20.4 years ago
Jianping Jin
▴ 890
0
votes
0
replies
550
views
Spikein Data Package Win32 download problem still present
20.4 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
744
views
normalizing incomplete arrays [was: limma error message]
Normalization
limma
Normalization
limma
20.4 years ago
Gordon Smyth
53k
0
votes
0
replies
941
views
gls.series and mrlm
limma
limma
20.4 years ago
Jason Skelton
▴ 510
0
votes
0
replies
261
views
problem with installing Rgraphviz
20.4 years ago
Qizheng Sheng
▴ 10
0
votes
0
replies
894
views
BioC problem: cannot install moe430a
moe430a
moe430a
20.4 years ago
Arthur Liberzon
▴ 10
0
votes
2
replies
2.0k
views
Asymmetric colors for heatmap
copynumber
copynumber
20.4 years ago
Christian.Stratowa@vie.boehringer-ingel…
▴ 270
0
votes
4
replies
1.2k
views
limma error message
20.4 years ago
Jianping Jin
▴ 890
0
votes
0
replies
884
views
moe430a and moe430av2 comparison
moe430a
cdf
probe
reposTools
affy
moe430a
cdf
probe
reposTools
affy
20.4 years ago
Margaret Gardiner-Garden
▴ 160
46,699 results • Page
849 of 934
Recent ...
Replies
Comment: segfault in edgeR glmQLFit
by
Mark
• 0
Thanks! We had been considering some of these adjustments as well, given the small number of features and total reads. Your advice is well-…
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ATpoint
★ 5.0k
> and I first used the normalized counts You would not use these normalized counts for PCA as they're not on log2 scale. As such, the feat…
Comment: EuroBioC2026 abstract submission is open!
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TikTsokaasocissalpc
• 0
Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…
Comment: DESeq2 on non-RNASeq counts data
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TikTsokaasocissalpc
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In data analysis, behavior differences based on data type are common. Similarly, Best EDI Software adapts to non-standard transaction volum…
Comment: blockwiseModule crashes in the end and doesn't generate modules
by
gexose2839
• 0
Sounds good. @[time][1] [1]: https://timeduration.github.io
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C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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