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Re: Additional questions regarding LIMMA
Normalization
BRAIN
Normalization
BRAIN
22.6 years ago
Gordon Smyth
53k
0
votes
0
replies
1.0k
views
Re: NormalizeForPrintorder
BRAIN
BRAIN
22.6 years ago
Gordon Smyth
53k
0
votes
1
reply
1.4k
views
help with getBioC
reposTools
reposTools
updated 22.6 years ago by
A.J. Rossini
▴ 810 • written 22.6 years ago by
Gordon Smyth
53k
0
votes
0
replies
1.1k
views
Error Installation for Genefilter
Biobase
genefilter
Biobase
genefilter
22.6 years ago
Lisa Devereaux
▴ 20
0
votes
2
replies
1.2k
views
question about ath1121501cdf package
cdf
probe
cdf
probe
updated 22.6 years ago by
Justin Borevitz
▴ 90 • written 22.6 years ago by
Wenlei Liu
▴ 20
0
votes
1
reply
1.2k
views
Errors in copy/paste
probe
probe
updated 22.6 years ago by
Jeff Gentry
★ 3.9k • written 22.6 years ago by
Claire Wilson
▴ 280
0
votes
1
reply
911
views
Problem Updating Packages
updated 22.6 years ago by
Jeff Gentry
★ 3.9k • written 22.6 years ago by
Paul Boutros
▴ 200
0
votes
1
reply
1.0k
views
Is a set of four arrays suitable for RMA analysis?
Cancer
affy
Cancer
affy
updated 22.6 years ago by
Rafael A. Irizarry
★ 2.3k • written 22.6 years ago by
Wei, Wenbin
▴ 50
0
votes
0
replies
913
views
R package for SAM
22.6 years ago
Holger Schwender
▴ 900
0
votes
0
replies
743
views
FAQ seems to be brocken
22.6 years ago
Oliver Hartmann
▴ 70
0
votes
2
replies
912
views
problem with getBioC()
updated 22.6 years ago by
Wolfgang Huber
★ 13k • written 22.6 years ago by
Antille,Nicolas,LAUSANNE,NRC-BAS
▴ 60
0
votes
3
replies
1.4k
views
normalize by or across all treatments
updated 22.6 years ago by
Isaac Neuhaus
▴ 360 • written 22.6 years ago by
Leanna House
▴ 10
0
votes
1
reply
889
views
Biobase/reposTools Dependency
Biobase
reposTools
Biobase
reposTools
updated 22.6 years ago by
rgentleman
★ 5.5k • written 22.6 years ago by
Colin A. Smith
▴ 220
0
votes
2
replies
1.7k
views
Question about R and expresso()
Microarray
Microarray
updated 22.6 years ago by
Rafael A. Irizarry
★ 2.3k • written 22.6 years ago by
Daniel ~
▴ 10
0
votes
0
replies
817
views
FW: normalize by or across all treatments
Normalization
Normalization
22.6 years ago
Stephen Henderson
★ 1.0k
0
votes
2
replies
975
views
chips A,B and C
Normalization
cdf
Normalization
cdf
updated 22.6 years ago by
Park, Richard
▴ 220 • written 22.6 years ago by
Antille,Nicolas,LAUSANNE,NRC-BAS
▴ 60
0
votes
2
replies
1.3k
views
can't read any CEL files using ReadAffy
cdf
probe
affy
cdf
probe
affy
updated 22.6 years ago by
Laurent Gautier
★ 2.3k • written 22.6 years ago by
Huang, Mingqian
▴ 20
0
votes
4
replies
2.0k
views
problem with bioconductor install script
updated 22.6 years ago by
Claire Wilson
▴ 280 • written 22.6 years ago by
Bela Tiwari
▴ 60
0
votes
0
replies
802
views
Bioinformatics postdoctoral position
22.6 years ago
Kristina Hanspers
▴ 40
0
votes
3
replies
1.4k
views
question abour background subtraction in RMA
affy
affy
updated 22.6 years ago by
mai98ftu@studserv.uni-leipzig.de
▴ 140 • written 22.6 years ago by
Antille,Nicolas,LAUSANNE,NRC-BAS
▴ 60
0
votes
1
reply
547
views
Question
updated 22.6 years ago by
rgentleman
★ 5.5k • written 22.6 years ago by
Catherine.Eng@stud.unibas.ch
▴ 10
0
votes
0
replies
806
views
Thanks. Problem solved
Cancer
Cancer
22.6 years ago
Fátima Núñez
▴ 130
0
votes
1
reply
1.5k
views
Problems accessing the Milan package through the vignettes Explorer
Cancer
Biobase
annotate
edd
geneplotter
multtest
tkWidgets
affydata
vsn
graph
hexbin
updated 22.6 years ago by
John Zhang
★ 2.9k • written 22.6 years ago by
Fátima Núñez
▴ 130
0
votes
1
reply
1.3k
views
Milan Package
multtest
affy
multtest
affy
updated 22.6 years ago by
John Zhang
★ 2.9k • written 22.6 years ago by
Claire Wilson
▴ 280
0
votes
1
reply
827
views
Kooky probe names (followup)
updated 22.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 22.6 years ago by
Crispin Miller
★ 1.1k
0
votes
3
replies
909
views
Probenames appearing as X1234.at
affy
affy
updated 22.6 years ago by
Shi, Tao
▴ 70 • written 22.6 years ago by
Crispin Miller
★ 1.1k
0
votes
2
replies
966
views
Hist in affy
Microarray
affy
Microarray
affy
updated 22.6 years ago by
Rafael A. Irizarry
★ 2.3k • written 22.6 years ago by
James W. MacDonald
68k
0
votes
2
replies
889
views
Bioconductor and BASE
Microarray
Microarray
updated 22.6 years ago by
A.J. Rossini
▴ 810 • written 22.6 years ago by
Lao Saal
▴ 30
0
votes
1
reply
1.2k
views
Golub example from Gentleman and Carey
Annotation
annotate
genefilter
Annotation
annotate
genefilter
updated 22.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 22.6 years ago by
John E. Cornell, Ph.D.
▴ 150
0
votes
0
replies
814
views
Mailing lists timeout of 17 hours...
22.6 years ago
Martin Maechler
▴ 330
0
votes
1
reply
1.1k
views
BUG : mistype in xy2indices, affy version 1.2.27
affy
affy
updated 22.6 years ago by
Laurent Gautier
★ 2.3k • written 22.6 years ago by
Pierre-yves Boëlle
▴ 10
0
votes
4
replies
1.3k
views
Affy Normalization!
Normalization
Normalization
22.6 years ago
Puhong Gao
▴ 140
0
votes
1
reply
1.1k
views
Difficulty in installing Biobase 1.3.22
GO
Biobase
GO
Biobase
updated 22.6 years ago by
Jeff Gentry
★ 3.9k • written 22.6 years ago by
lshen@intergate.com
▴ 10
0
votes
0
replies
773
views
LIMMA functions
limma
limma
22.6 years ago
Pingzhao Hu
▴ 10
0
votes
0
replies
1.1k
views
PSB 2004 - call for papers
annotate
annotate
22.6 years ago
Wang, Hui
▴ 170
0
votes
0
replies
1.1k
views
Re: funnction in LIMMA
limma
PING
limma
PING
22.6 years ago
Gordon Smyth
53k
0
votes
7
replies
6.0k
views
installing XML in linux
updated 22.6 years ago by
A.J. Rossini
▴ 810 • written 22.6 years ago by
Mahbub Latif
▴ 70
0
votes
0
replies
1.4k
views
[R] Re: installing XML in linux
22.6 years ago
Duncan Temple Lang
▴ 10
0
votes
0
replies
768
views
expression values
GO
GO
22.6 years ago
Ben Bolstad
★ 1.1k
0
votes
1
reply
1.3k
views
multtest
multtest
multtest
updated 22.6 years ago by
Sandrine Dudoit
▴ 170 • written 22.6 years ago by
Stefanie Scheid
▴ 20
0
votes
0
replies
868
views
Bioconductor commands in Unix online documentation re quest
Cancer
Cancer
22.6 years ago
Warnes, Gregory R
▴ 460
0
votes
0
replies
911
views
Bioconductor commands in Unix online documentation request
PROcess
PROcess
22.6 years ago
Adaikalavan Ramasamy
▴ 140
0
votes
8
replies
2.4k
views
change working directory command on command line
updated 22.6 years ago by
Rafael A. Irizarry
★ 2.3k • written 22.6 years ago by
Tapan Mehta
▴ 270
0
votes
0
replies
724
views
OT: overlapping oligo sequences
hgu133a
probe
hgu133a
probe
22.6 years ago
Johannes Hüsing
▴ 100
0
votes
2
replies
1.0k
views
read.GenePix problem.
updated 22.6 years ago by
Jean Yee Hwa Yang
▴ 920 • written 22.6 years ago by
Ivan Borozan
▴ 20
0
votes
0
replies
850
views
New version of annaffy
GO
affy
GO
affy
22.6 years ago
Colin A. Smith
▴ 220
0
votes
0
replies
633
views
help
22.6 years ago
fire1976 wyoming
▴ 380
0
votes
1
reply
902
views
reposTools 1.1.45 not on website version 1.1.43
updated 22.6 years ago by
Jeff Gentry
★ 3.9k • written 22.6 years ago by
Dave Waddell
▴ 160
0
votes
3
replies
1.3k
views
Calculation times
Cancer
Cancer
updated 22.6 years ago by
Jeff Gentry
★ 3.9k • written 22.6 years ago by
Claire Wilson
▴ 280
0
votes
3
replies
1.5k
views
Affy vs. cDNA : Low and not expressed genes
Normalization
Normalization
22.6 years ago
Adaikalavan Ramasamy
▴ 140
46,711 results • Page
921 of 935
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures
by
ferran.llobet.cabau
▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Votes
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
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Lluís Revilla Sancho
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Aleena_Ensembl
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Hervé Pagès
16k
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