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630
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Q: 5 perc. change/year in Affy annotation?
Microarray
Microarray
22.8 years ago
Alexander Ploner
▴ 10
0
votes
5
replies
1.0k
views
heatmaps
22.8 years ago
Stephen Henderson
★ 1.0k
0
votes
1
reply
1.0k
views
[R] SAM: Significance of Microarray Analysis availability in R
Microarray
Microarray
22.8 years ago
Adaikalavan Ramasamy
▴ 140
0
votes
0
replies
756
views
MAS 5.0 duplication
probe
probe
22.8 years ago
DMITRY GRIGORYEV
▴ 90
0
votes
0
replies
913
views
[R] SAM: Significance of Microarray Analysis availability in R
22.8 years ago
Adaikalavan Ramasamy
▴ 140
0
votes
0
replies
1.3k
views
Package globaltest
GO
globaltest
GO
globaltest
22.8 years ago
Jeff Gentry
★ 3.9k
0
votes
0
replies
917
views
Re: SAM: Significance of Microarray Analysis availability
Microarray
Microarray
22.8 years ago
Nicholas Lewin-Koh
▴ 430
0
votes
0
replies
761
views
SAM: Significance of Microarray Analysis availability in R
22.8 years ago
Adaikalavan Ramasamy
▴ 140
0
votes
4
replies
1.5k
views
Recent changes to Bioconductor packages
MultiChannel
tkWidgets
affy
Rgraphviz
MultiChannel
tkWidgets
affy
Rgraphviz
22.9 years ago • updated 22.8 years ago
madman@jimmy.harvard.edu
▴ 850
0
votes
1
reply
2.4k
views
using R behind firewall
updated 22.8 years ago by
Jeff Gentry
★ 3.9k • written 22.8 years ago by
YUE_YONG@lilly.com
▴ 10
0
votes
0
replies
821
views
getBioC change
reposTools
reposTools
22.8 years ago
Jeff Gentry
★ 3.9k
0
votes
5
replies
2.1k
views
getBioC v1.2.22 & [R] v1.6.2
annotate
edd
genefilter
geneplotter
rhdf5
multtest
ROC
tkWidgets
reposTools
affy
vsn
updated 22.8 years ago by
Jeff Gentry
★ 3.9k • written 22.8 years ago by
White, Charles E WRAIR-Wash DC
▴ 70
0
votes
0
replies
1.2k
views
make CDF env (fwd)
Cancer
cdf
affy
makecdfenv
Cancer
cdf
affy
makecdfenv
22.8 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
872
views
Problems with the package makecdfenv
cdf
affy
cdf
affy
22.8 years ago
Tobias Mueller
▴ 10
0
votes
4
replies
1.2k
views
Problem loading affy using a saved workspace
Microarray
affy
Microarray
affy
22.8 years ago
James W. MacDonald
68k
0
votes
4
replies
1.2k
views
cdf
affy
PROcess
cdf
affy
PROcess
updated 22.8 years ago by
Rajasree Menon
▴ 30 • written 22.9 years ago by
Tiago R Magalhaes
▴ 60
0
votes
0
replies
849
views
make CDF env
cdf
probe
cdf
probe
22.8 years ago
Wenqiong Chen
▴ 40
0
votes
2
replies
884
views
Affy scan
GO
GO
updated 22.8 years ago by
Rafael A. Irizarry
★ 2.3k • written 22.8 years ago by
Eric
▴ 20
0
votes
0
replies
837
views
download method in getBioC
22.8 years ago
Jeff Gentry
★ 3.9k
0
votes
1
reply
1.3k
views
formal methods and classes and capitalization conventions
affy
affy
updated 22.8 years ago by
Vincent J. Carey, Jr.
6.7k • written 22.8 years ago by
Gordon Smyth
53k
0
votes
1
reply
946
views
passing marrayRaw data to VSN
vsn
vsn
updated 22.8 years ago by
Wolfgang Huber
★ 13k • written 22.8 years ago by
Matthew Fero
▴ 20
0
votes
3
replies
1.5k
views
Automation Server for R?
updated 22.8 years ago by
MOConnell@insightful.com
▴ 20 • written 22.8 years ago by
Park, Richard
▴ 220
0
votes
2
replies
1.6k
views
feature selection
Classification
Classification
updated 22.8 years ago by
Liaw, Andy
▴ 360 • written 22.8 years ago by
Karen.Chancellor@asu.edu
▴ 20
0
votes
1
reply
993
views
One run and dead
affy
affy
updated 22.8 years ago by
Vincent J. Carey, Jr.
6.7k • written 22.8 years ago by
DMITRY GRIGORYEV
▴ 90
0
votes
0
replies
903
views
Replicate quality assessment?
GO
GO
22.8 years ago
Luckey, John
▴ 90
0
votes
1
reply
1.2k
views
MAS on Bioconductor
mgu74av2
affy
mgu74av2
affy
updated 22.8 years ago by
Rafael A. Irizarry
★ 2.3k • written 22.8 years ago by
Kelvin Yen
▴ 20
0
votes
1
reply
1.1k
views
Cannot load widgetTools package
Biobase
tkWidgets
reposTools
Biobase
tkWidgets
reposTools
updated 22.8 years ago by
Vincent J. Carey, Jr.
6.7k • written 22.8 years ago by
Gunter, Bert
▴ 10
0
votes
1
reply
1.5k
views
PRgSQL
AnnBuilder
AnnBuilder
updated 22.8 years ago by
Jeff Gentry
★ 3.9k • written 22.8 years ago by
Qi Sun
▴ 10
0
votes
3
replies
2.0k
views
Install problem of some BioConductor packages under linux R session
hexbin
hexbin
updated 22.8 years ago by
Jeff Gentry
★ 3.9k • written 22.8 years ago by
buhard Ceph
▴ 10
0
votes
0
replies
863
views
rma error
22.8 years ago
Kristina Hanspers
▴ 40
0
votes
2
replies
1.2k
views
package download
22.8 years ago
Ding, Wei
▴ 50
0
votes
0
replies
765
views
affy package ?s
Normalization
probe
affy
Normalization
probe
affy
22.8 years ago
Luckey, John
▴ 90
0
votes
0
replies
901
views
Getting unmodified Affy-Data via R+ and the Affy package...
GeneSpring
GeneSpring
22.8 years ago
Joern Wessels
▴ 20
0
votes
2
replies
980
views
FW: get all NaN values
updated 22.8 years ago by
Sue Kong
▴ 20 • written 22.9 years ago by
Wang, Hui
▴ 170
0
votes
0
replies
798
views
bioconductor-download
AnnBuilder
AnnBuilder
22.8 years ago
Anita Grigoriadis
▴ 10
0
votes
1
reply
1.3k
views
bioconductor GO data package
GO
GO
updated 22.8 years ago by
Vincent J. Carey, Jr.
6.7k • written 22.8 years ago by
Wilkinson, Mark
▴ 60
0
votes
4
replies
1.6k
views
mva functions
updated 22.8 years ago by
Wolfgang Huber
★ 13k • written 22.8 years ago by
Jason Skelton
▴ 510
0
votes
3
replies
1.6k
views
quantile normalization approach
Normalization
Normalization
22.8 years ago
Wang, Hui
▴ 170
0
votes
2
replies
1.4k
views
Affy and Custom CDF files
cdf
probe
cdf
probe
updated 22.8 years ago by
Rafael A. Irizarry
★ 2.3k • written 22.8 years ago by
Jeff Sorenson
▴ 70
0
votes
1
reply
1.1k
views
Question about affy
Yeast
affy
Yeast
affy
updated 22.8 years ago by
Rafael A. Irizarry
★ 2.3k • written 22.8 years ago by
Mary Logue
▴ 10
0
votes
0
replies
1.3k
views
RE: Bioconductor Digest, Vol 1, Issue 271
Normalization
Preprocessing
probe
affy
hexbin
Normalization
Preprocessing
probe
affy
22.8 years ago
Huang, Cheng-Cheng NIH/NCI
▴ 30
0
votes
1
reply
806
views
Affy package ?s (sorry for the repost)
Normalization
probe
affy
Normalization
probe
affy
updated 22.8 years ago by
Ben Bolstad
★ 1.1k • written 22.8 years ago by
Luckey, John
▴ 90
0
votes
0
replies
952
views
Re: Bioconductor Digest, Vol 1, Issue 270
hexbin
hexbin
22.8 years ago
Nicholas Lewin-Koh
▴ 430
0
votes
0
replies
816
views
getBioC connection problem
22.8 years ago
Ding, Wei
▴ 50
0
votes
7
replies
1.5k
views
P calls
22.8 years ago
Stephen Henderson
★ 1.0k
0
votes
1
reply
1.1k
views
Spot matrix manglings?
Normalization
Normalization
updated 22.8 years ago by
Jean Yee Hwa Yang
▴ 920 • written 22.9 years ago by
Barry Henderson
▴ 250
0
votes
1
reply
1.2k
views
packagename, PackageName, packageName
updated 22.8 years ago by
Martin Maechler
▴ 330 • written 22.9 years ago by
Gordon Smyth
53k
0
votes
1
reply
1.1k
views
RE: pm or mm methods for AffyBatch object
cdf
cdf
updated 22.8 years ago by
Wolfgang Huber
★ 13k • written 22.8 years ago by
Wang, Hui
▴ 170
0
votes
1
reply
937
views
pm or mm methods for AffyBatch object
cdf
cdf
updated 22.8 years ago by
Wolfgang Huber
★ 13k • written 22.9 years ago by
Wang, Hui
▴ 170
0
votes
1
reply
959
views
get all NaN values
cdf
cdf
updated 22.9 years ago by
Johannes Hüsing
▴ 100 • written 22.9 years ago by
Wang, Hui
▴ 170
46,725 results • Page
926 of 935
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Replies
Answer: Incosistencies in buildSNNGraph() function
by
stephengriffin04
• 0
Thank you for shedding light on the inconsistencies in the `buildSNNGraph()` function. It's crucial for users to address these issues as th…
Answer: A problem occurs when running the monocle2
by
stephengriffin04
• 0
I totally feel you on the monocle2 issues! I had a similar run-in with unexpected errors last week that had me pulling my hair out. Did you…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR
by
Gordon Smyth
53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Votes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
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