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3
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1.3k
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variable "mgu74av2cdf" was not found
cdf probe cdf probe
updated 23.2 years ago by ★ 1.1k • written 23.2 years ago by ★ 1.4k
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1
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833
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Bioconductor 1.1
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23.2 years ago Jeff Gentry ★ 3.9k
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affy, se.exprs slot.
updated 23.2 years ago by ★ 2.3k • written 23.2 years ago by ▴ 190
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updated 23.2 years ago by ★ 3.9k • written 23.2 years ago by ★ 1.4k
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3
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23.2 years ago Dick Beyer ★ 1.4k
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maGnames
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updated 23.2 years ago by ▴ 10 • written 23.2 years ago by ▴ 10
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23.2 years ago Puhong Gao ▴ 140
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1.3k
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request for letter of support
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Background Measurements
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updated 23.2 years ago by ▴ 920 • written 23.2 years ago by ▴ 10
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859
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Affy Bugs?
23.2 years ago Zhong Guan ▴ 10
0
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2
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updated 23.2 years ago by ★ 13k • written 23.2 years ago by ▴ 30
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Metabolomic data: Gas Chromotography and Mass Spec
updated 23.2 years ago by ▴ 460 • written 23.2 years ago by ▴ 430
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863
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Bioconductor_1.0.tar.gz
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Affy : checkSlotAssignment() Error
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23.2 years ago Sundaram, Shyam NIH/CIT ▴ 110
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23.2 years ago Nicholas Lewin-Koh ▴ 430
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affy vignette and affy development package
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Expression Array databases...
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23.2 years ago Anthony Rossini ▴ 530
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8
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specifying hyperlinks on the plot
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23.2 years ago Laurent Gautier ★ 2.3k
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updated 23.2 years ago by ★ 3.9k • written 23.2 years ago by ▴ 60
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23.2 years ago Paul Boutros ▴ 200
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updated 23.2 years ago by ★ 1.0k • written 23.2 years ago by ▴ 110
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missing GO identifier in hgu133a GO
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23.2 years ago Anthony Rossini ▴ 530
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Package installtion perfect but for...
updated 23.2 years ago by ★ 3.9k • written 23.2 years ago by ▴ 10
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updated 23.3 years ago by ★ 2.3k • written 23.3 years ago by ▴ 80
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6
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can't get summary.stat after "invariantset" normalizat ion
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23.3 years ago Man, Michael ▴ 80
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1
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Help with raw p-value
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updated 23.3 years ago by ▴ 170 • written 23.3 years ago by ▴ 70
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updated 23.3 years ago by ▴ 60 • written 23.3 years ago by ▴ 30
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affy affy
23.3 years ago Warnes, Gregory R ▴ 460
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Re: Bioconductor digest, Vol 1 #134 - 5 msgs
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23.3 years ago Paul Boutros ▴ 200
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Bioconductor Software
updated 23.3 years ago by ★ 3.9k • written 23.3 years ago by ▴ 10
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updated 23.3 years ago by ▴ 640 • written 23.3 years ago by ▴ 100
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3
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0
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updated 23.3 years ago by ▴ 70 • written 23.3 years ago by ★ 2.3k
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New documentation on website
23.3 years ago Jeff Gentry ★ 3.9k
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updated 23.3 years ago by ★ 2.3k • written 23.3 years ago by ▴ 10
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updated 23.3 years ago by ★ 13k • written 23.3 years ago by ▴ 180
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tkWidges
updated 23.3 years ago by ★ 2.9k • written 23.3 years ago by ▴ 10
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
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It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
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The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
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I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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