Bioconductor Forum

Jeff Leek • 610

1 day ago

United States

For : Removing batch effects with sva and combat using the sva package

Dan Tenenbaum ♦ 8.2k

13 days ago

United States

For : Bioconductor 3.2 is released!

Dan Tenenbaum ♦ 8.2k

13 days ago

United States

For : A: What is the best way to get help on Bioconductor packages?

Dan Tenenbaum ♦ 8.2k

13 days ago

United States

For : Announcing Docker containers for Bioconductor

Matthew Ritchie • 970

19 days ago

Australia

For : Bioconductor Community Advisory Board Nominees

Sean Davis 21k

23 days ago

United States

For : Orchestrating a small, parallel, RNA-seq pre-processing workflow using R

YunYun • 70

3 days ago

For : it paused in line **byte-compile and prepare package for lazy loading** when install package EnsDb.Hsapiens.v75

Batool • 370

5 weeks ago

For : Comment: `ggbio` package can't be installed

Batool • 370

5 weeks ago

For : Comment: `TxDb.Hsapiens.UCSC.hg19.knownGene` and `Homo.sapiens` can't be installed anymor

Batool • 370

5 weeks ago

For : `TxDb.Hsapiens.UCSC.hg19.knownGene` and `EnsDb.Hsapiens.v75` can't be installed anymore

Batool • 370

5 weeks ago

For : Comment: `ggbio` package can't be installed

Batool • 370

5 weeks ago

For : `ggbio` package can't be loaded

Batool • 370

5 weeks ago

For : Comment: it paused in line **byte-compile and prepare package for lazy loading** when in

Thomas Girke ♦ 1.7k

8 days ago

United States

For : A: heatmap.2() get matrix after hierarchical clustering

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: Possible ways of performing differential gene expression and analysis of RNA-Seq

Johannes Rainer ♦ 1.8k

20 days ago

Italy

For : A: How to map all Ensembl IDs to Gene Symbols- Problem with AnootationDbi

Assa Yeroslaviz ♦ 1.5k

10 weeks ago

Munich, Germany

For : A: Problem with biomart's listMarts function

Assa Yeroslaviz ♦ 1.5k

10 weeks ago

Munich, Germany

For : A: could not find symbol "keepNA" in environment of the generic function

Steve Lianoglou 13k

2 days ago

Denali

For : A: Using RNA-Seq raw count data in Weighted Gene Co-Expression Network Analysis

shepherl 2.5k

1 day ago

United States

For : SUPPORT SITE UPGRADE COMPLETE

António Miguel de Jesus Domingues • 480

6 days ago

Germany

For : A: Plot ggplot2 and ggbio Images Together

Mike Smith ♦ 4.8k

18 hours ago

EMBL Heidelberg / de.NBI

For : A: Biomart error when updating to R 4.0.2

Mike Smith ♦ 4.8k

18 hours ago

EMBL Heidelberg / de.NBI

For : A: Error: Bioconductor version '3.8' requires R version '3.5'

Mike Smith ♦ 4.8k

18 hours ago

EMBL Heidelberg / de.NBI

For : A: R: error while reading .h5 files from R using rdhf5 package

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : Rsubread now available for Windows

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: correcting the batch effects in Limma and SVA

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: How barcode-plot enrichment is calculated?

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: Why different filtering criteria using CPM to filter the RNA-seq count data in e

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: Differential expression analysis starting from TPM data

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: Using voomWithQualityWeights for differential expression analysis.

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: Appropriate ways to filter counts data for voom/limma

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: Fit a multinomial to RNA-seq count data

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: How to remove more than two batches in my data-sets

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: when to apply quantile normalization with voom in limma/voom framework with RNA-

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: EdgeR cpm: factor of 2 when adjusting library size?

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: gene dispersion, what does it mean?

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: DESeq and Limma+Voom Normalization for Rna-Seq Data Using Ercc Spike-In

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: Normalization methodology in DESeq/DESeq2 vs edgeR

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: Do the outputs of Limma's competitive gene set methods (camera, romer) require a

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: Statistical analysis of Spectral count data : edgeR, limma or others ?

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: Gene symbols on MA-plot

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: Correct assumptions of using limma moderated t-test

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: Nanostring analysis with limma

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: Removing continuous covariate effects in limma analysis

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: voom for spectral counts

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: Confidence intervals on edgeR logFC

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: RNA-Seq, generate batch-free count matrix

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : Differences between limma voom E values and edgeR cpm values?

Gordon Smyth 42k

6 hours ago

WEHI, Melbourne, Australia

For : A: Differential expression of RNA-seq data using limma and voom()

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Badge: Appreciated • All

Awarded 390 times for : created a post with more than 5 votes Recently awarded to

Awarded 390 times for : created a post with more than 5 votes

Recently awarded to