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4 years, 9 months ago
The Cave, 181 Longwood Avenue, Boston, …
Answer: analyzing RNA-Seq transcriptomic data (GEO accession: GSE96058)
4 years, 9 months ago
WEHI, Melbourne, Australia
Answer: Getting differentially expressed genes for time points
4 years, 9 months ago
United States
Answer: Major on-target peak not appearing in GUIDEseq results
4 years, 9 months ago
United States
Answer: Limma outputs different results for same sample?
4 years, 10 months ago
United States
Answer: log2 Fold Change in DESeq2 is not identical to FC calculated from normalized cou
4 years, 10 months ago
United States
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
4 years, 10 months ago
United States
Answer: Checking/updating package versions
4 years, 10 months ago
United States
Answer: Issues with installation status of R package rtracklayer
4 years, 11 months ago
United States
A: Unexpected error with topGO, cannot build topGOdata object
4 years, 11 months ago
United States
Answer: error while installing " BSgenome.Hsapiens.UCSC.hg19"
4 years, 11 months ago
Seattle, WA, United States
Answer: How to retrieve genomic coordinates for a list of entrezID and their respective
4 years, 11 months ago
Germany
Answer: DESeq2 variance stabilizing transformation: why is assay() different from getVar
4 years, 12 months ago
Germany
Answer: WHat is the difference between DEG and TopVarGenes in DESEq2?
5 years ago
Wageningen University, Wageningen, the …
Answer: How to remove dendrogram from pheatmaps?
5 years ago
United States
Answer: se does not inherit from class SummarizedExperiment
5 years ago
United States
Answer: Changing Row Names of MultiAssayExperiment Assay
5 years, 1 month ago
The Cave, 181 Longwood Avenue, Boston, …
A: How to design formula
5 years, 1 month ago
The Cave, 181 Longwood Avenue, Boston, …
A: Coding vs Noncoding Genes in Hit List
5 years, 1 month ago
The Cave, 181 Longwood Avenue, Boston, …
A: DESeq2 Multiple Conditions: Do I need a "reference"?
5 years, 1 month ago
The Cave, 181 Longwood Avenue, Boston, …
A: Is there a way to save and open an expression set?
5 years, 1 month ago
The Cave, 181 Longwood Avenue, Boston, …
A: pltPCA in DESeq2
5 years, 1 month ago
The Cave, 181 Longwood Avenue, Boston, …
A: DEG analysis for Micro array affymetrix
5 years, 1 month ago
The Cave, 181 Longwood Avenue, Boston, …
C: DESeq2 rlog blinding if calculating variance of expression?
5 years, 1 month ago
The Cave, 181 Longwood Avenue, Boston, …
A: Annotation for Affymetrix GeneChip PrimeView.
5 years, 1 month ago
United States
Answer: Paired Time course Experiment Design on edgeR between and within groups
5 years, 1 month ago
Netherlands
A: Controlling numerical covariates: differential gene expression with limma voom
5 years, 1 month ago
WEHI, Melbourne, Australia
Answer: How to get gene length for RPKM directly from DGEList object in latest edgeR?
5 years, 1 month ago
United States
A: Is it capable to analysis the unbalanced time course experiment by DESeq2?
5 years, 2 months ago
WEHI, Melbourne, Australia
A: Comparing DEseq2 and Limma program, results not consistent
5 years, 2 months ago
United States
A: How to add colors to the PCA made using SNPRelate
5 years, 2 months ago
United States
A: RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
5 years, 2 months ago
WEHI, Melbourne, Australia
A: Differential gene expression associated with change in blood parameter following
5 years, 2 months ago
United States
A: Building an HDF5Array/DelayedArray object incrementally
5 years, 2 months ago
United States
A: Calculating standard deviation for a few genes using RNAseq data
5 years, 2 months ago
WEHI, Melbourne, Australia
A: TMM normalization on sparse datasets
5 years, 2 months ago
United States
A: Is the ExpressionSet Class Deprecated?
5 years, 2 months ago
The Cave, 181 Longwood Avenue, Boston, …
A: How do I subset a GRanges object based on chromosome (and approximate region)?
5 years, 3 months ago
United States
A: logFC when counts are zero across all samples in the two groups
5 years, 3 months ago
United States
A: Error in DESeqDataSet : some values in assay are not integers
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