clusters <- DECIPHER::IdClusters( d, method = "complete", cutoff = 0.03, # use cutoff = 0.03 for a 97% OTU processors = nproc)
but I received "Error: 'IdClusters' is not an exported object from 'namespace:DECIPHER'"
I tried to install several times DECIPHER with this BiocManager::install("DECIPHER") and it does not mark any error in the installation. I am using R 4.2.2.
Is anybody having the same trouble?
clusters <- DECIPHER::TreeLine(
myDistMatrix=d,
method = "complete",
cutoff = 0.03, # use `cutoff = 0.03` for a 97% OTU
type = "clusters",
processors = nproc)
As Marcel noted above, it is considered bad form to just remove (or split) functions without a deprecation/defunction cycle. At the very least you should add a deprecation warning to point end users to the new functions.
As Marcel noted above, it is considered bad form to just remove (or split) functions without a deprecation/defunction cycle. At the very least you should add a deprecation warning to point end users to the new functions.