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DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
DESeq2
9 days ago • updated 14 hours ago
ussarizona
▴ 10
1
vote
4
replies
195
views
Opposite sign of LFC in count plots of DEGs (DESeq2)
DESeq2
2 days ago • updated 23 hours ago
winwater0928
• 0
1
vote
7
replies
147
views
Math expression in shapeCustom legend in EnhancedVolcano
EnhancedVolcano
1 day ago • updated 12 hours ago
pl23
• 0
0
votes
2
replies
105
views
PCA plot suggestions
DESeq2
PCAtools
updated 13 hours ago by
Michael Love
41k • written 2 days ago by
Aaliya
• 0
1
vote
3
replies
101
views
Deseq2. decontXcounts not integers. Useful alternative?
DESeq2
celda
updated 16 hours ago by
Michael Love
41k • written 1 day ago by
JalapenoCornbread
• 0
0
votes
1
reply
96
views
Improving the design matrices vignette in RNAseq123
RNAseq123
updated 20 hours ago by
Gordon Smyth
50k • written 4 days ago by
Lluís Revilla Sancho
▴ 730
0
votes
1
reply
55
views
ATACseq merge peaks
DiffBind
updated 16 hours ago by
ATpoint
★ 4.0k • written 2 days ago by
Shloka
• 0
1
vote
1
reply
36
views
Dominance Index for Shotgun Metagenomics Data
microbiome
updated 6 hours ago by
Leo Lahti
▴ 40 • written 17 hours ago by
Dario Strbenac
★ 1.5k
8 results • Page
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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