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News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
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News: List of Deprecated Packages for Bioc3.17
Bioconductor Deprecation Devel devel
13 months ago • updated 11 months ago shepherl 3.9k
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News: May 31st is the last day to nominate for Bioc2023 Awards!
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11 months ago shepherl 3.9k
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News: Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
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11 months ago Maria Doyle ▴ 70
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News: Junior Developer or New Package Developer Award
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News: Bioconductor Community Engagement, Outreach, and Diversity Award
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13 months ago • updated 12 months ago shepherl 3.9k
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News: Bioconductor Long-term Contribution Award
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News: Nominations for Bioconductor 2023 Awards!
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13 months ago • updated 12 months ago shepherl 3.9k
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News: course - single-cell RNAseq data analysis with R and Bioconductor
Workshop scRNAseq
12 months ago info ▴ 10
60 results • Page 2 of 2
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Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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