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need help with Diffbind multiple groups
DiffBind
ChIPSeqData
8 hours ago
Dinesh
• 0
0
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0
replies
55
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dba.plotProfile() plotting and interpretation
DiffBind
3 days ago
Henry
▴ 10
0
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0
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53
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flowStats for CyTOF
flowStats
4 days ago
tholmes
• 0
0
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0
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49
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DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
4 days ago
yvonneh
• 0
0
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45
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How to create consensus peak sets for each group to use in DiffBind?
DiffBind
4 days ago
Ian D.
▴ 70
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137
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Differences in differential analysis methods for RNA-Seq
DESeq2
StatisticalMethod
Proteomics
DifferentialExpression
RNASeq
updated 4 days ago by
ATpoint
★ 4.1k • written 5 days ago by
james.zhang20
• 0
0
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0
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93
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Empty table plot using plotGseaTable()
fgsea
5 days ago • updated 3 days ago
Chris
• 0
0
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0
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128
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One error problem occurred caused by data type during using GDCprepare function of TCGAbiolinks to handle TCGAbiolinks BRCA data
GDCRNATools
TCGA
11 days ago • updated 3 days ago
glaciya2018
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8 results • Page
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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