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Job: Statistical Bioinformatics Laboratory Head, WEHI, Melbourne, Australia
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Job: Postdoctoral researcher, Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Australia
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Job: Postdoctoral Bioinformatics Analyst, Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Australia
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Job: Postdoctoral position, Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Australia
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Job: Senior Postdoctoral Fellow in Computational Biology/Bioinformatics : Adelaide, Australia
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Job: Bioinformatics Researcher - University of Adelaide, South Australia
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Job: Senior Bioinformatics Researcher - University of Adelaide, South Australia
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Job: Bioinformatics Research Associate, University of Adelaide
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updated 5.8 years ago by ▴ 20 • written 5.9 years ago by ▴ 170
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Job: Bioinformatics Laboratory Head, Walter and Eliza Hall Institute of Medical Research
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6.0 years ago • updated 5.9 years ago Gordon Smyth 42k
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Comment: phenotypic table for DESeqDataSetFromHTSeqCount by Michael Love 33k
Another issue is whether R is allowed to read those files I guess. Try reading one in with `read.table` or `scan(..., what="char")`
Comment: phenotypic table for DESeqDataSetFromHTSeqCount by rbenel ▴ 20
Sorry the `directory` variable in my code was `ExonCountFiles` A vector of `TRUE` :) Which means to me that the function is looking for…
Answer: DESeq2 Multi-factor design not full rank by Michael Love 33k
> How can I create a custom model matrix that requires colData information from a dds object that in turn hasn’t been generated due to the …
Comment: phenotypic table for DESeqDataSetFromHTSeqCount by Michael Love 33k
Oh sorry I didn't see any code including a `directory` argument in your post. Then to debug do: ``` file.exists(file.path(directory, samp…
Comment: phenotypic table for DESeqDataSetFromHTSeqCount by rbenel ▴ 20
The vector contains just `FALSE`... So where is the `directory` parameter set to read files from? Currently I have `directory` set to a t…
Votes
Answer: erorr in normalization with DiffBind: pv$binding[, colnum] <- pv$peaks[[i]]$RPKM
Answer: phenotypic table for DESeqDataSetFromHTSeqCount
Comment: `aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size awa
Answer: Error: C stack usage of HDF5Array
Answer: "dim<-" against on-disk arrays
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