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BSgenome forge
•
reset
2
votes
5
replies
2.5k
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Forge a BSgenome data package
bsgenome
bsgenome forge
7.8 years ago • updated 7.4 years ago
jodiera
• 0
0
votes
7
replies
2.1k
views
BSgenomeForge error in .TwoBits_export
bsgenome forge
TwoBits_export
updated 7.2 years ago by
Hervé Pagès
16k • written 7.2 years ago by
stu111538
• 0
2
votes
1
reply
1.6k
views
How do I create BSgenome Bos_taurus_UMD3.1?
bsgenome forge
bovine
updated 9.7 years ago by
Hervé Pagès
16k • written 9.7 years ago by
mbk0asis
• 0
0
votes
1
reply
1.5k
views
Error from BSgenome forge using .2bit file
BSgenome forge
2bit
bsgnome forge
2bit file
updated 9.7 years ago by
Hervé Pagès
16k • written 9.7 years ago by
mbk0asis
• 0
3
votes
2
replies
1.4k
views
CRISPRseek with (rough) Draft Genome
crisprseek
grna searching
bsgenome forge
offtarget analysis
updated 8.5 years ago by
Hervé Pagès
16k • written 8.5 years ago by
rajewski23
• 0
1
vote
3
replies
1.3k
views
BSgenomeForge version 1.52.0, error in .TwoBits_export
bsgenome forge
twobits_export
bioconductor
5.3 years ago
bioinagesh
• 0
0
votes
3
replies
1.3k
views
BSGenome problem with forgeBSgenomeDataPkg command
bsgenome forge
8.4 years ago
pj dias
▴ 60
7 results • Page
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Answer: Margins for gene_set_enrichment_plot
by
Leonardo Collado Torres
★ 1.1k
Hi, In version 1.19.4 of `spatialLIBD` @lahuuki re-implemented the `gene_set_enrichment_plot()` function using `ComplexHeatmap::Heatmap(…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 20
Maria please read the mirTarRnaSeq paper. In particular, Supplemental Table 2, clarifies all the statistical models, inputs and outputs. If…
Comment: Help using rtracklayer for gene ID extraction
by
James W. MacDonald
67k
Telling me you can't do something without showing what you tried is not helpful. When posting here, try to put yourself in the shoes of peo…
Comment: miRTarRnaseq library
by
María Calvo
• 0
Hello Mercedeh, excuse me for not explaining it adecuately, Im using the "Part3 - Identify significant miRNA mRNA relationships for 2 time …
Answer: Need new version : tx2gene.gencode.v47.csv
by
Guido Hooiveld
★ 4.1k
Assuming that you would like to import the results from `salmon`, it is highly recommended to now use `tximeta`. By doing so, all required …
Votes
Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
Answer: Mapping Between GenBank ID's and Uniprot
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