Bioconductor BioStrings

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102

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biostrings Biostrings

updated 20 hours ago by James W. MacDonald 65k • written 1 day ago by mat149 ▴ 70

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134

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Biostrings GenomeAssembly

updated 5 weeks ago by James W. MacDonald 65k • written 5 weeks ago by Karen • 0

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216

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Biostrings

5 weeks ago ramiro.barrantes ▴ 10

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429

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Biostrings

7 weeks ago • updated 6 weeks ago Gerhard Thallinger ▴ 180

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157

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Biostrings

3 months ago Angela Michalichyn • 0

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770

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SequenceMatching Biostrings DifferentialExpression Proteome

updated 7 months ago by Hervé Pagès 16k • written 7 months ago by nromerov • 0

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526

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Biostrings

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by rogerb • 0

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699

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Microarray Alignment Biostrings

written 12 months ago by sandmann.t ▴ 70

8 results • Page 1 of 1

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Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…

Comment: Differences in differential analysis methods for RNA-Seq by james.zhang20 • 0

Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…

Answer: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k

There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…

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A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

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Popular Question to rohitsatyam102 ▴ 20