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BioStrings
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DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
8.2 years ago • updated 4 days ago
Henrik Bengtsson
★ 2.4k
0
votes
3
replies
183
views
Store output of matchPWM()
biostrings
Biostrings
updated 8 days ago by
James W. MacDonald
65k • written 8 days ago by
mat149
▴ 70
0
votes
1
reply
141
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Trimming a section of a scaffold from a genome
Biostrings
GenomeAssembly
updated 6 weeks ago by
James W. MacDonald
65k • written 6 weeks ago by
Karen
• 0
2
votes
2
replies
239
views
From a DNAStringSet to a data.frame
Biostrings
6 weeks ago
ramiro.barrantes
▴ 10
1
vote
5
replies
442
views
Biostrings: read*StringSet() functions leave open file handles
Biostrings
9 weeks ago • updated 7 weeks ago
Gerhard Thallinger
▴ 180
0
votes
0
replies
166
views
How to search for a string in a DNAStringSet dataset?
Biostrings
3 months ago
Angela Michalichyn
• 0
2
votes
6
replies
783
views
Biostrings error at retrieving protein sequences
SequenceMatching
Biostrings
DifferentialExpression
Proteome
updated 7 months ago by
Hervé Pagès
16k • written 7 months ago by
nromerov
• 0
1
vote
3
replies
545
views
AAbin vs DNAbin structures
Biostrings
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
rogerb
• 0
0
votes
2
replies
713
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Probe off-target prediction: Identifying short sequence matches - potentially with mismatches & indels - in a transcriptome
Microarray
Alignment
Biostrings
written 12 months ago by
sandmann.t
▴ 70
9 results • Page
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Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Answer: Differential gene expression analysis results
by
ATpoint
★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Votes
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
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