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News: Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor BioC2023 Conference
14 months ago Maria Doyle ▴ 90
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News: May 31st is the last day to nominate for Bioc2023 Awards!
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15 months ago shepherl 4.0k
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News: Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
Bioconductor Community BioC2023
15 months ago Maria Doyle ▴ 90
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News: Last Week to Nominate for Bioc2023 Awards!
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16 months ago shepherl 4.0k
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News: Junior Developer or New Package Developer Award
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News: Bioconductor Community Engagement, Outreach, and Diversity Award
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17 months ago • updated 16 months ago shepherl 4.0k
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News: Bioconductor Long-term Contribution Award
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16 months ago shepherl 4.0k
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News: Nominations for Bioconductor 2023 Awards!
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17 months ago • updated 16 months ago shepherl 4.0k
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News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
updated 4 weeks ago by • 0 • written 19 months ago by ▴ 90
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News: Seeking members for BioC2023 organizing committee
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20 months ago • updated 19 months ago Maria Doyle ▴ 90
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News: Save the Date Bioc2023!
Bioc2023 Conference Bioconductor
22 months ago shepherl 4.0k
11 results • Page 1 of 1
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Comment: How to use removeBatchEffect for removing effect of multiple confounding variabl by James W. MacDonald 67k
Please don't add questions onto a four-year old post. Instead, start a new one. If you want to reference the old post, that's fine.
Answer: How to use removeBatchEffect for removing effect of multiple confounding variabl by bioinformata • 0
Is it feasible to remove batch effect with limma after variance stabilizing transformation of the gene expression , or is eough to use vst…
Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by James W. MacDonald 67k
Hi Guido, It's that last filtering step. You are saying the NCBI Gene ID has to be unique AND the ontology has to be BP, which isn't what …
Comment: AffylmGUI does not start wit R 4.4.1 by richardallenfriedmanbrooklyn ▴ 20
Gordon, I found out what went wrong. The problem was that the xquartz distribution for mac from cran did not include tcltk! I found that b…
Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by Guido Hooiveld ★ 4.1k
Hi James, I am likely missing something obvious, but why is the code that I used returning a different number of genes having a GOALL-BP a…
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Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th
Answer: Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjus
Answer: Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjus
Answer: clusterProfiler: BgRatio N value does not match the size of the gene universe th
Answer: object 'hdac_targets' not found
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Popular Question to Gordon Smyth 51k
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Popular Question to Mthabisi Moyo ▴ 40
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