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BiocFileCache
•
reset
6
votes
12
replies
4.9k
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BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
6 months ago • updated 13 days ago
shepherl
3.9k
3
votes
6
replies
1.3k
views
Caching bam index files using BiocFileCache
BiocFileCache
23 months ago • updated 19 months ago
kent.riemondy
▴ 20
2
votes
8
replies
2.5k
views
biomaRt : No lock file for BiocFileCache
BiocFileCache
biomaRt
updated 2.1 years ago by
Martin Morgan
25k • written 2.1 years ago by
ZheFrench
▴ 50
0
votes
3
replies
703
views
How to keep remote file name by bfcadd in BiocFileCache?
BiocFileCache
updated 4.2 years ago by
shepherl
3.9k • written 4.2 years ago by
Qiang
▴ 80
0
votes
2
replies
1.3k
views
Failure to save txDb using saveDb in BiocFileCache location other than /tmp
tximeta
BiocFileCache
updated 3.1 years ago by
Michael Love
41k • written 3.1 years ago by
judith.risse
• 0
0
votes
1
reply
1.1k
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
3.1 years ago
shepherl
3.9k
0
votes
1
reply
647
views
Importing more than 100,000 at once into BiocFileCache
BiocFileCache
updated 2.7 years ago by
Mike Smith
★ 6.5k • written 2.7 years ago by
pierrick.roger
• 0
7 results • Page
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Comment: Method to find pathways different between 2 groups
by
Chris
• 0
Sorry for not clear. I just try to find papers use this method for learning purpose.
Comment: Improving the design matrices vignette in RNAseq123
by
Lluís Revilla Sancho
▴ 730
Cool. Thanks for looking into it.
Comment: Couldn't connect to server while using "pathways"
by
ATpoint
★ 4.1k
Please understand that we neither can see your screen, nor read minds. You at least need to provide the line of code and the name of the pa…
Answer: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of unavailability.…
Votes
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
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