Bioconductor CAGE

Showing : CAGE • reset

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2.3k

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CAGEr cage

updated 3.0 years ago by jingxian.18 • 0 • written 8.6 years ago by Vivek.b ▴ 100

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1.4k

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cager cage ctss

updated 4.3 years ago by Charles Plessy ▴ 180 • written 5.2 years ago by sarac ▴ 20

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1.0k

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TSS promoter cage cager

5.8 years ago bharata1803 ▴ 60

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958

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CAGEfightR CAGE

updated 5.2 years ago by maltethodberg ▴ 180 • written 5.2 years ago by sarac ▴ 20

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851

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CAGEFightR CAGE CTSS

5.3 years ago July • 0

5 results • Page 1 of 1

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Comment: Rsubread alignment crashes at 35%, valgrind indicates invalid writes by Yang Liao ▴ 440

Thank you for the additional information! We are currently developing a significantly improved version of `Sublong`. Unfortunately, the old…

Answer: object 'hdac_targets' not found by James W. MacDonald 67k

I believe you missed some steps: ``` ## ----trTargets------------------------------------------------------------- tr_targets <- subse…

Answer: KEGGgraph result difference by alex.pico ▴ 20

I'm not surprised that this fails. Not all GraphNELs nor igraphs are the same, so these chains of conversions are fraught with peril. Assu…

Answer: In the sesame package, what does the estimate output mean from testEnrichment() by James W. MacDonald 67k

It's right there in the output (`Log2(OR)`). It's doing a Fisher's exact test, which returns an odds ratio, and the output is the log odds …

Comment: WGCNA Choosing soft threshold power below R^2 0.8 by Lluís Revilla Sancho ▴ 730

This is not a bioconductor pacakge, but have you considered that something might be off with your data? Do you have enough samples of each …

Votes

C: Usability of ERCC spike-ins in standard RNAseq experiments

A: Usability of ERCC spike-ins in standard RNAseq experiments

A: Using the ERCC spike as a normalization factor for a custom algorithm

Answer: Cannabis and KEGGgraph

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Popular Question to Robert Castelo ★ 3.4k