Bioconductor CATALYST

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visua Visualization CATALYST

17 months ago elefth.pavlos ▴ 40

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CATALYST

updated 24 months ago by Hervé Pagès 16k • written 24 months ago by Hyoann ▴ 20

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713

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CATALYST

2.2 years ago Shaun • 0

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1.0k

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CATALYST

updated 21 months ago by SamGG ▴ 360 • written 2.7 years ago by David • 0

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CATALYST

2.8 years ago David • 0

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CATALYST SingleCellExperiment

updated 4.4 years ago by helucro ▴ 70 • written 4.4 years ago by achaillon • 0

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CATALYST cytofWorkflow

updated 5.5 years ago by Martin Morgan 25k • written 5.5 years ago by Brent.OCarrigan • 0

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1.3k

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CATALYST flowCore assignPrelim Error in vapply read.FCS

6.3 years ago j.krop • 0

8 results • Page 1 of 1

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Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change by James W. MacDonald 68k

Yes, you can simply flip the sign of the logFC to reverse the direction of the comparison.

Comment: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

The argument for annotation_col is meant to be a `data.frame`, not a vector. The hint in the error is that it has the wrong number of dimen…

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

I used this argument in the second paragraph of code forthe heatmap, this is wehre I got the message Error in `[.default`(annotation_col, c…

Answer: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

Ah, yes. The non-ASCII character error. My favorite! Please note that `pheatmap` is not a Bioconductor package, so you should be asking …

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

It is in ! It just took longer than planned :) ... aaaand now that I added the heatmap in I realize lits of genes really do not look like t…

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Comment: Heatmap of a transformed deseq object with pheatmap

DESeq2: Question about the alpha in summary() and results()

Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

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